sckott/labnotebook

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sckott/labnotebook

sckott

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Open science notebook blog

cowsay

cowsay w/ more animals, in R

habanero

client for Crossref search API

usdaplantsapi

DEFUNCT - REST API for the USDA Plants Database

rphylopic

Get silhouettes of organisms from Phylopic.

rforcats

elastic_data

Elasticsearch datasets ready for bulk loading

request

http requests DSL for R

cchecksapi

CRAN checks API (DEFUNCT)

pytaxize

python port of taxize (taxonomy toolbelt) for R

serrano

Low level Ruby client for Crossref

ftp

pdfimager

Extract images from pdfs using poppler <https://poppler.freedesktop.org/>

musemeta

R Client for scraping museum metadata

geoops

geoops does spatial operations on GeoJSON

cites

Citation searching and retrieval

mutant

mutation testing for R

fauxpas

fauxpas does http errors

apipkgen

Generate an R package from API specs

gggraph

Make graph/network plots with the ggplot2 package for R

webmiddens

cache http requests

httpcode

http status code investigation

recology

Code for the Recology blog

textmine

rOpenSci textmining manuscript

pytaxa

taxonomic classes for Python

spenv

Combine environmental and spatial data

openadds

Openaddresses R client

pyminer

Text-mining toolset for Crossref data

httping

Ping urls to time requests

beer_recipes

my beer recipes

spplit

connect species occurrence data to literature

parseids

Parse identifiers (e.g., DOIs)

talks

my posters and talks

extcite

pull dois out of pdfs > content negotation > bib file

discgolf

Discourse API R client

pubpatternsapi

PubPatterns REST API (DEFUNCT)

pubpatterns

Lookup for full text urls

rfna

Web page scraping for eFloras, including the Flora of North America

ridb

client for Index Database of remote sensing indices

splister

match species list against reference list

scott

tpl-sqlite

ThePlantList as SQLite

auditopendata

audit open data in articles

rtaxamatch

taxamatch implementation in R

spplist

apisforcats

gbifms

manuscript covering rgbif, pygbif, and gbifrb

gbifrb

GBIF Ruby client; docs: http://www.rubydoc.info/gems/gbifrb/0.1.0

textminer

text mine via Crossref's TDM

ftdoi

Retrieve full-text urls on a per publisher basis

gbif-backbone-sql

GBIF Darwin Core taxonomic backbone to SQLite

rforcatshex

Hex sticker for rforcats.net

bienapi

resteasy

rwikispeedia

R interface to Wikispeedia

howmanyparams

catfact

demo pkg using vcr for httr testing

tecks

jqr

jq inspired json parsing

wdclients

Web Data R Clients

biodivcode

esamd

Materials for an #ESA2013 workshop on Markdown/git

mstext

Manuscript on rOpenSci scholarly text packages

IntWebData

Interface with the Interaction Web Database

shinyio

sxslt

nsidc

sacbox

Library of R functions from me and others

taxize

veyor

Appveyor API client for Ruby

beer_recipes2

rgeojson

Files to convert to geojson in R

soylocs

restaurants that use soybean oil (mostly in portland), blarg!!!!

nameparser

R port of Ruby's biodiversity scientific name parser

scientist

Experiment with changes R code, scripts or packages

turtles

pdftoolspdfs

rrocksdb

egnar

European Nucleotide Archive R client

usgs

R interface to USGS APIs

rubfuns

playing with ruby functions in R

traitdb

https://traits.party

SSOAP

apispecs

vcrhttr2

Testing Integeration of httr2 with vcr

isu-2016-11-16

tacksize

taxonomic library for Ruby

func

Tools for function development

rubrb

helper cli methods for R package devs

dendro

gbids

Genbank ID checker/converter API - DOWN as of 2016-11-27

pyalm_scott

work

latex documents, etc.

foobar3

foobar2

taxspell

Spell Check Taxonomic Names

apistatus

pyror

Research Organization Registry Python Client

ncbi-common-tree

astr

canadiana

Canadiana R client