scilus/general-utils

This repository has been archived on 27/Sep/2023
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scilus/general-utils

scilus

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General utilities and scripts used in the lab.

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

fibernavigator

The original Fibernavigator: tool for vizualization of DTI and MRI data

ismrm_2015_tractography_challenge_scoring

Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge

dmri-explorer

A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

dmriqcpy

Diffusion MRI Quality Check in python

containers-tractoflow

Files needed to build a Singularity container to run the TractoFlow pipeline

FiberCompression

A tool for tractography streamlines compression

dmriqc_flow

A Nextflow pipeline for diffusion MRI quality check

docker-vtk-8.2.0

Docker for VTK 8.2.0 with Mesa for offscreen rendering

scil-documentation

Documentation for the SCIL

rbx_flow

connectoflow

extractor_flow

freewater_flow

tractoflow-ABS

TractoFlow Atlas Based Segmentation

quactography

containers-dmriqc

Docker container for Diffusion MRI Quality Check

register_flow

disco_challenge

nf-scil

SCIL Nextflow Toolbox

cave-fibers

A project to bring Fiber tractography visualization and interaction to the University of Sherbrooke's CAVE

containers-scilus

Files needed to build a container to run all scilus flows.

registration_flow

Nextflow pipeline to register Nifti and Trk in a common space