sc-zhang/ALLHiC_Evaluate_Data_Generators

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Python
License
MIT License
Created over 5 years ago
Updated 7 months ago

sc-zhang/ALLHiC_Evaluate_Data_Generators

sc-zhang

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Some scripts for generating simulate data for evaluating ALLHiC

bioplotz

A plot package for bioinformatics

AlleleFinder

AlleleFinder is a tool for identifying allele genes from polyploid genome.

bioscripts

several scripts for bioinformatics

CATG

CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for assembly.

ALLHiC_components

Some components that speed up and reduce resource cost for original ALLHiC

T2Tools

T2Tools is a toolset contains several tools for T2T assembly, and it is under development.

ALLHiC_adjuster

A toolset for adjusting ALLHiC assembly

popCNV

popCNV is a tool for calculating copy number of genes and get genes selected by humans

BarcodePHP

A PHP library for generating EAN 8/13 barcode

MATE

MATE (Meaningful Allelic-haploType dEtector) is a tool for identifying allelic haplotype associate with phenotypes.

kPart

kPart is a kmer-based tool for partition contigs into groups with parents, previous name is TrioCC

CUFscripts

Some scripts for visualizing Papaya SV

wbf2wbfs

A simple tool for converting Wii games from wbf format to wbfs, batch convert support.

Visual Basic .NET

PanPara

PanPara is a tool for identifying paralog genes with pan-genome.

PanMarker

PanMarker is a tool for identifying variants associate with phenotypes from pan-genome.

boring_codes

Coding when boring.

SCLibrary

Simple C/C++ Libraries, for exercising

NGC_Wii_Game_ID

A simple tool for reading and writing game name and game id for Wii (wbfs/iso) and NGC(gcm/iso)

Visual Basic .NET

sc-zhang

KITE

MHSPF

MHSPF(MicroHomologous Sequences Pairs Finder) is a simple tool for searching MHS pairs from genome

Text2Folder

A simple tools which can create multi folders with a list file

Visual Basic 6.0

png2ico

The png2ico is a simple tool for converting png file to ico file or ico file to png file.

pPart