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rbi
R package for Bayesian inference with state-space models using LibBi.mfiidd
Model fitting and inference for infectious disease dynamicsmodelling
Introduction to infectious disease modelling in RfitR
Functions for model fitting and inferencerbi.helpers
Helper functions for inference with LibBi. Building on the rbi library.R2C3
Create C3 graphics with Rnbbpchainsizes
Code to compare different models for branching processes with negative binomial offspring distributionepimixr
Epidemiological analysis using social mixing matricesdynmod
Stuff for modelling infectious disease dynamicsebola.forecast.wa.sl
Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15"ebola_lofa
Code for analysing Ebola in Lofa Countyinference_pomp_rbi
Source code for the example given in the article "Choices and trade-offs in inference with infectious disease models"sk_covid_19
fluclade
Flu clade frequency model implemented in libbivbd
Vector-bourne disease modelsflusurvey
code for flusurvey analysissk.measles
Code accompanying the manuscript "Estimating contact-adjusted immunity levels against measles in South Korea and prospects for maintaining elimination status".ebola_forecasting_challenge
Code for the Ebola forecasting challengeimmunity.thresholds
Code accompanying the manuscript "Combining serological and contact data to derive target immunity levels for achieving and maintaining measles elimination".Love Open Source and this site? Check out how you can help us