Discover samply/mtba Open Source project by Samply (@samply)

A turnkey solution for joining federated research networks.

bridgehead

BBMRI FHIR Test Data Generator

bbmri-fhir-gen

bbmri-fhir-ig

This is the source for the BBMRI.de / GBA Implementation Guide.

GLSL

blaze-quality-reporting-ui

Experimental FHIR Quality Reporting Authoring UI

Elm

lens-angular

Federated Data Exploration Toolkit in Medical Environments

A reusable toolkit for rich federated data exploration.

adt2fhir

XSLT

lens

This tool enables DIC and biobanks to move or sync fhir data while mapping to MII KDS or bbmri.de profiles

TransFAIR

share-client

fhir-valueset-gen

Federated query dispatcher using Samply.Beam

focus

The sample locator is a graphical user interface for searching bio samples.

sample-locator

directory-sync

teiler-ui

directory_sync_service

Standalone component for Directory sync

encryption-api

Terraform Provisioning for Resources on Open Telekom Cloud

open-telekom-cloud

HCL

icd-dictionary

The data transfer objects and some helper classes used in the (Samply) OAuth2 flows.

ccp-sql-mapping

auth-dto

A simple library used for the Samply.Auth and other OIDC provider

auth-client

common-mdrfaces

JavaScript

converter.dktk.patient

searchbroker-ui

manifest

Samply Manifest

HTML

common-webjars

JavaScript

store-biobanks

common-http

Parent POM for open source SAMPLY projects

maven-parent

share-common

Create a XML File for Samply.MDR from HL7® FHIR® Conformance Resources

store

fhir2mdr

This service provides a classic Samply.Store API in front of a FHIR server.

icinga2-email-summary

store-fhir-adapter

Convert model objects to an MDR XML file

store-osse

mdr-tools-xml-conv

ccp-sql-mapping-tools

laplace-rs

EXLIQUID Dashboard Prototype

patient-test-data-generator

exliquid

Make it easy for users to find the right samply repositories

samply-component-finder

docker-common

common-mdrvalidator

common-ldmclient

patient-test-data-generator-ui

common-mailing

Samply.Beam companion application to enroll a local node in the system.

beam-enroll

Protokolle zu Meetings, etc.

knowledge-base

file-transfer

share-dto

A tool to manage beam installations

beamctl

The library for all samply config files

common-config

A small monitoring service for your local bridgehead. It checks local components and transmit the status to the central CCP-IT Icinga2

bridgehead-monitoring

Python

teiler-root-config

Single SPA root config project for Teiler UI

project-directory-client

bbmri-auth-dto

Teiler backend for teiler-ui

teiler-core

bridgehead-vaultfetcher

A simple landingpage for the bridgehead

bridgehead-landingpage

Python

store-rest

github-workflows

A collection of github action workflows used in the repositories of the samply organization.

common-web-jsf-renderer

common-mdrclient

A minimal templating engine for use in Bridgehead deployments

templer

dktk-fed-search-share

Repository containing resources for generating FHIR resources for transforming any structured data into FHIR

fhir_maping_lang

Python

mds-search-tool

report-hub

A Service able to manage and execute FHIR Quality Reports.

Java Library for differential privacy-inspired query obfuscation

laplace-java

Java classes representig the Samply.MDR metadata objects

mdr-tools-model

Quality Report Generator based on Samply Exporter

reporter

bridgehead-forward-proxy

Extension of the ubuntu/squid image

lens-demo

Centrally-hosted service that mediates between Lens and Beacon 2.0 sites.

lens-beacon-service

beam-deploy

A service that uses Samply.Beam for HTTP calls across network boundaries

beam-connect

dktk-explorer

Exports data from the datawarehouses of the bridghead in different formats

exporter

searchbroker

FHIR profiles of the Oncology project

oncology-fhir-ig

common-ldmclient-cql

A template for the local configuration of the bridgehead.

bridgehead-config

Docker Compose File for Deployment of the Sample Locator

sample-locator-deployment

Dockerfile

mdr-deployment

Install all components needed for a working MDR

Closure Templates

common-ldmclient-centraxx

common-ldmclient-samplystore-biobank