salilab/imp_tutorial salilab/imp_tutorial

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    Python
  • License
    Creative Commons ...
  • Created about 10 years ago
  • Updated 5 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
salilab/imp_tutorial
github

salilab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks

More Repositories

1

imp

The Integrative Modeling Platform
C++
73
star
2

cryptosite

Library for prediction of cryptic binding sites
Python
20
star
3

pmi

Python Modeling Interface
Python
12
star
4

rmf

The library to support reading and writing of RMF files.
C++
7
star
5

metamodeling

MATLAB
5
star
6

saliweb

Simple framework for web services in the Sali lab
Python
5
star
7

modloop

Web server for automated modeling of loops in protein structures
Python
5
star
8

allosmod-lib

Protocol to model with allostery
Python
4
star
9

hmc

IMP module for Hamiltonian Monte Carlo
Python
4
star
10

foxs

Web server for fast SAXS profile computation with Debye formula
JavaScript
3
star
11

itcell

Integrative T-cell epitope prediction web service
Python
3
star
12

conda-recipes

Recipes for the conda package manager
Shell
3
star
13

pathway_mapping

Python modules, scripts, and examples for integrative pathway mapping
Jupyter Notebook
3
star
14

npctransport

IMP module for simulating transport through the NPC.
C++
3
star
15

SOAP

Python SOAP framework for calculating statistically optimized atomic potentials
Python
3
star
16

imp-sampcon

Scripts to assess sampling convergence and exhaustiveness
Python
3
star
17

PMI_analysis

Python
2
star
18

foxsdock

Web service for macromolecular docking with SAXS profiles
Python
2
star
19

IHMValidation

Validation software for integrative models deposited to PDB
HTML
2
star
20

bayesian_hdx

Support code for HDX data reduction
Python
2
star
21

HMCUtilities.jl

Julia
2
star
22

itcell-lib

Integrative T-cell epitope prediction
Perl
1
star
23

rmf_chimerax

ChimeraX plugin to read and visualize RMF files
Python
1
star
24

imp_website

Website for the IMP project
PHP
1
star
25

zotero

Styles and other files used in the Sali lab with Zotero
1
star
26

allosmod

Web service for simulations on a user-provided energy landscape
Perl
1
star
27

multifoxs

Web server for multi-state modeling with SAXS profiles
HTML
1
star
28

threading

IMP module to sample sequence threading
Python
1
star
29

modbase_utils

Utilities for interacting with the ModBase database
Python
1
star
30

cryptosite-web

Web server for prediction of cryptic binding sites
Python
1
star
31

homebrew-salilab

🍻 Sali Lab formulae for homebrew
Ruby
1
star
32

domino3

Experimental DOMINO variant using traditional inference
C++
1
star
33

imp_biological_systems

A repository for scripts and data for applying IMP to biological systems.
Parrot
1
star
34

asgl

Program for preparing all sorts of PostScript plots from simple data files
Fortran
1
star
35

mist

Mass spectrometry interaction STatistics
Python
1
star
36

mist-web

Mass spectrometry interaction STatistics (web interface)
Python
1
star
37

cross_linking_tutorial

Introduction to working with cross-linking data using IMP
Jupyter Notebook
1
star