Discover saketkc/notebooks Open Source project

Package for fetching metadata and downloading data from SRA/ENA/GEO

475

pysradb

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

307

gencode_regions

Snakemake based pipeline for RNA-Seq analysis

rna-seq-snakemake

pyseqlogo

Python package to plot sequence logos

Python package to perform normalization and variance-stabilization of single-cell data

pySCTransform

'h'omeworks, 'a'ssignments 'tex' for courses at USC

hatex

Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)

riboraptor

Instructions for accessing USC's VPN on linux

usc-vpn-linux-setup

Shell

moca

Ⓜ️ Tool for motif conservation analysis

PostScript

scilab_cloud

☁️ Scilab on Cloud

Scilab

open-ehr-django

An Electronic Health Records System in *pure* Django.

kicad-ngspice

🔌 Some tweaks integrated in a python script to make kiCAD and ngspice compatible to each other

Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"

scRNA_NB_comparison

dcpp.js

🔧 DC++ straight from your Browser! No Sharing Required!

Motif logos in matplotlib (POC)

motif-logos-matplotlib

Variational autoencoders using Tensorflow's eager API

variational-autoencoders-tf-eager

📪 Ruby Wrapper to assign tasks on pivotal through an email

pivotal-tracker-email-wrapper

Ruby

sklearn-hogsvd

Scikit-learn compatible python implementation of HO-GSVD

Snakefiles/Python scripts to create conservation tracks

multiZ-scripts

Perl

covmuller

Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID

pyFLGLM

blog

Tools for whole slide image processing and classification

pyvirchow

galaxy_tools

EE-546-project

bio-tricks

biojs-genetic-variation-viewer

♻️ BioJS1.0 Component for visualising human gentic variations, GSoC2014

Snakemake based pipeline for analysing iCLIP-Seq data

iclip-seq-snakemake

Homebrew Personal recipes

brewer

Ruby

ug_acads

UG Acads IIT B Open Sourced !

Snakemake pipeline for Ribo-Seq analysis

blog-archive

💾 => 📡

HTML

ribo-seq-snakemake

Review of Scientific Papers

review

rnn-cds-prediction

Prediction of CDS regions using RNNs

resume

HTML

overleaf-cloner

Clone your Overleaf.com projects at once!

Python notebooks for Nature's Point of Significance collection: http://www.nature.com/collections/qghhqm/pointsofsignificance

points-of-significance

Haskell 99 Problems' Solutions

haskell99

Haskell

machine_learning

My experiments with ML

math-501-project

📓 Optimal Control Design of a Reparable Multistate system

moodi-hack

talks

moca_web

Ⓜ️ Code for MOtif Conservation Analysis

Send Stories to pivotal through emails !

comp-bio

C++

pivotal_email_tracker_bot

iitb-library-sms-interface

Sends automated SMSes reminding you of due dates from IITB moodle/asc

Snakemake pipeline for end-to-end Ribo-seq analysis

re-ribo-smk

Python Wrapper for TCGA API

tcga-python

Allows you to download moodle files for all your courses. This will grow into a website later

moodle-stack

Access DropBox files using SMS

dropbox_on_sms

Ruby

SPOJ_haskell

HAskel Solutions for SPOJ

Haskell

scrape_ebi

Automate Submissions To EBI portals

Fast fitting for counts data using Minka's algorithm

pyfastnbfit

A chrome extension that allows running code on ideone simply by selecting the text in a browser window

ideone-chrome-extension

All Google-AppEngine Projects that I did. Try out the links at foldername.appspot.com

Google-AppEngine-Projects

dotfiles

Collection of dotfiles

Shell

predicting-cds-rnn

Instant Search for SlideShare Documents

SlideShare-Instants

protein_loop_closure

Protein Loop Closure Algorithm

538 -- We all need stimulants.

riddler

Instant Search for SlideShare Documents

SlideShare-Instant

pyjoyplot

POC for a 'joyplot' using matplotlib