• Stars
    star
    1
  • Language
    Shell
  • License
    MIT License
  • Created 8 months ago
  • Updated 8 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

basic scripts for server administration

More Repositories

1

fastq-dl

Download FASTQ files from SRA or ENA repositories.
Python
257
star
2

dragonflye

๐Ÿ‰ ๐Ÿชฐ Assemble bacterial isolate genomes from Nanopore reads
Perl
100
star
3

fastq-scan

Output FASTQ summary statistics in JSON format
C++
27
star
4

vcf-annotator

Add biological annotations to variants in a given VCF file.
Python
22
star
5

pasty

A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
Python
11
star
6

pbptyper

In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
Python
9
star
7

assembly-scan

Generate basic stats for an assembly.
Python
8
star
8

illumina-cleanup

A simple pipeline for pre-processing Illumina FASTQ files.
Nextflow
3
star
9

goblin

GOBLIN - Generate trusted prOteins to supplement BacteriaL annotatIoN
Python
2
star
10

any2tsv

Convert various bioinformatic outputs to TSV
Python
2
star
11

call_variants

A ruffus pipeline to call variants following GATK best practices.
Python
2
star
12

steamboat-py

A collection of tools/scripts for microbial bioinformatics
Python
1
star
13

django-kmer-test

Tests to determine the most efficient way to store DNA k-mers.
Python
1
star
14

workshops

A repository of trainings and workshops
1
star
15

StarCluster-Plugins

A few plugins created for Staphopia's StarCluster instances
Python
1
star
16

fitbit-steps

Pull yesterday's total steps from FitBit
Python
1
star
17

binf-scripts

Personal bioinformatic related scripts that need a home.
Python
1
star
18

camlhmp

๐ŸชClassification through yAML Heuristic Mapping Protocol ๐Ÿช
Python
1
star