rosalindfranklininstitute/okapi-em

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rosalindfranklininstitute/okapi-em

rosalindfranklininstitute

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napari plugin to deal with charging artifacts in tomography electron microscopy data

RedLionfish

Jupyter Notebook

parakeet

Phantom generator

cuda-slic

A CUDA implementation of the SLIC Superpixel algorithm

Jupyter Notebook

Ot2Rec

Pipeline to reconstruct cryo-electron tomograms with different software packages

python-multem

Python wrapper for the MULTEM simulation package

rfi-file-monitor

kompressor

A lossless neural compression framework built on top of JAX.

napari-quoll

Napari plugin for resolution measurement of EM images

HDRUK-CoMeTR

Comprehensive Metrics for the quantitative and qualitative evaluation and comparison of Tomography Reconstructions

scivision-parakeet-datasource

antigen-app

Web app for managing nanobody data

LeopardGecko

Software to analyse microscopy volumetric data that has been segmented by ML prediction

Jupyter Notebook

scivision-parakeet

Parakeet plugin for scivision framework

baskerville

Baskerville cluster job workflow and utilities

Chamelogator

Data mining the Chameleon database

empiar-spw

RiboDist

Utility to calculate distance between ribosomes (particles) with lamella edges

phd-training-2022

This repo is a selection of worked example used in our PhD training

Jupyter Notebook

hancock

service to work with data catalogue to retrieve presigned URLs of items stored on S3.

DisTRaX

A fast and scalable deployment tool to create quick and efficient storage systems onto high-performance computing (HPC) compute nodes utilising the compute nodes system memory/storage.