roblanf/treemaker

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3
Rank 3,963,521 (Top 79 %)
Language
Python
Created over 11 years ago
Updated over 11 years ago

roblanf/treemaker

roblanf

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make smaller trees out of bigger ones, doing smart stuff along the way

minion_qc

Quality control for MinION sequencing data

sangeranalyseR

functions to analyse sanger sequencing reads in R

sarscov2phylo

Global phylogenies of SARS-CoV-2 sequences

phypapers

How to set up a literature bot on Bluesky

BenchmarkAlignments

Benchmark empirical datasets for phylogenetic method development

minion_multiQC

multi-tool QC for minion data

raspberrytrap

Reputable-Open-Access-Journals

a subjective list of open access journals that have good reputations

euc_qc

quality control shell scripts for mapping short-read sequencing data to distant reference genomes

pcurver

R functions to analyse distributions of p values

SRHtests

tests of stationarity, reversibility, and homogeneity for sequence alignments

pvalues

code to extract p values from open access papers

AIPhylo

machine learning for phylogenetics

DS4B2023

Data Science for Biologists 2023

communitree

analysis of community assembly using phylogenetics in R

netcaster

Python framework for evolving neural network architectures

Jupyter Notebook

phylofunctions

a collection of often very basic functions for phylogenetic utilities in Python