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clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene setsvalr
Genome Interval Arithmetic in Rdjvdj
An R package to analyze single-cell V(D)J dataggtrace
ggplot2 geoms to outline groups of data pointspractical-data-analysis
Short course using RStudio for biological data analysisnihexporter
An R data package for NIH EXPORTER datascraps
Single-cell RNA Processing Softwareclustifyrdatahub
External single-cell mRNA sequencing data sets for use with clustifyrcellar
scRNA-Seq analysis vignettessometa
Inclusion of processed cell metadata improves single cell sequencing analysis reproducibility and accessibilityscbp
utility boilerplate single cell functionsraer
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experimentsrnaedits
Analysis of A-to-I RNA editing during hibernationsquirrelbox
Shiny app to browse hibernating ground squirrel brain tissue RNA-seq data, new genome assembly and transcriptome annotation.scRNA-seq-Cell-Ref-Matrix
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humansscrna-subsets
Recovery of transcriptome subsets from pooled single cell RNA sequencing librariesscrapR
R package for importing and processing scraps reference and outputmolb-7950
MOLB 7950: Informatics and Statistics for Molecular BiologycellrangerAWS
Command line tool to run Cell Ranger using AWSmedulloblast
single cell RNA-seq survey of childhood medulloblastomarhumba
Snakemake pipelines for RNA sequencing datarnastruct
Pipeline for investigating RNA structure-Seq dataspatialshiny
Browser for Spatial Transcriptomics, built on R ShinytRNA004
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarkingdeepsort-rs
sort demultiplexed reads based on deeplexicon outputsfuzzyfastq-rs
Rust implementation of fuzzy matching of sequences in FASTQ filesgene_model_plot
Python package designed to visualize gene models from GTF files and variants from VCF files.clustifyr-web-app
An R Shiny app to help with scRNA-seq benchmarking and analysis with clustifyrrbi-website
Website for the RNA Bioscience Initiative at CU Anschutzbmsc-7810-pbda
BMSC 7810: Practical biological data analysis with R/RStudioscinter
overview of single cell visualization toolsvisium-probe-design
Generate probes for the 10x Genomics fixed assaydetectrms-rs
Fast detection of rna modifications sitesLove Open Source and this site? Check out how you can help us