rmgarnett/active_virtual_screening

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MATLAB
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MIT License
Created almost 7 years ago
Updated almost 7 years ago

rmgarnett/active_virtual_screening

rmgarnett

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MATLAB code to replicate experiments from https://doi.org/10.1007/s10822-015-9832-9

cse515t

Materials for Bayesian Methods in Machine Learning Course

active_learning

Active learning toolbox for MATLAB

gpml_extensions

Provides various extensions to the GPML toolbox for Gaussian process inference in MATLAB.

active_gp_hyperlearning

Active learning of GP hyperparameters following Garnett, et al., "Active Learning of Linear Embeddings for Gaussian Processes," (UAI 2014).

fast_wl

A fast MATLAB implementation of the Weisfeiler--Lehman graph transformation and associated kernel.

mgp

An implementation of the MGP from Garnett, et al., "Active Learning of Linear Embeddings for Gaussian Processes," UAI 2014.

dbpedia_graph_extractor

A simple tool to extract labeled graphs (corresponding to desired types) from DBpedia.

gp_dla_detection

Detecting Damped Lyman-alpha Absorbers (DLAs) with Gaussian Processes

coinciding_walk_kernel

An implementation of the coinciding walk kernel (CWK) from Neumann, et al. "Coinciding Walk Kernels." ACML 2013.

data

scripts for processing datasets used in my papers

active_search

MATLAB code for performing active search (Garnett, et al., "Bayesian Optimal Active Search and Surveying," ICML 2012).

propagation_kernels

plotting

dlas