riverlee/miRNA-SNP riverlee/miRNA-SNP

  • Stars
    star
    1
  • Language
    Perl
  • Created over 12 years ago
  • Updated over 12 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
riverlee/miRNA-SNP
github

riverlee

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

The code is to get SNPs located in miRNA/pre-miRNA and their relationship(in loop, upstream of miRNA, downstream of miRNA, seed region or just in the miRNA) miRNA data is from mirBase while dbSNP data is from vcf file

More Repositories

1

MitoSeek

Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
Perl
40
star
2

pileup2base

Parse samtools pileup file to get how many bases and what kind of bases are called
Perl
14
star
3

viewFusion

View fusion event by circos plot
10
star
4

RNASeqDEPipeline

RNA-Seq differential gene expression pipeline
R
8
star
5

IntronGTF

Make a Intron GTF file from a bed
Perl
6
star
6

genbank2gtf

Perl
6
star
7

ATAC

Perl
3
star
8

orolab

CSS
2
star
9

CQScripts

A collection of scripts when I worked at Vanderbilt
Perl
2
star
10

DO.db

Scripts to build up DO.db package based on a obo file
R
2
star
11

Temp

Python
1
star
12

Personal

Personal code
Perl
1
star
13

NGScripts

A collection of scripts for NGS data analysis
Perl
1
star
14

DOSim

DOSim is developed on DO to 1) measure the similarity between diseases (DO terms), 2) measure the similarity between human genes in terms of diseases, 3) detect DO-driven gene modules and multilayer annotate them on dieases (DO), functions(GO) and pathways(KEGG), 4) conduct DO enrichment analysis, and 5) visualize and describe DO structures and terms. It focuses on the computation of disease similarity and gene similarity. Besides, its module detection and annotation would promote our understanding of the complex pathogenesis of diseases.
PHP
1
star