rivas-lab/semm rivas-lab/semm

  • Stars
    star
    4
  • Rank 3,304,323 (Top 66 %)
  • Language
    C++
  • Created about 5 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
rivas-lab/semm
github

rivas-lab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Sex Effects Mixture Model for GWAS summary statistics

More Repositories

1

covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Jupyter Notebook
42
star
2

public-resources

Repository for resources we'd like to share with the community.
Jupyter Notebook
24
star
3

snpnet

snpnet - Efficient Lasso Solver for Large-scale genetic variant data
R
18
star
4

ukbb-tools

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
Jupyter Notebook
7
star
5

mvpmm

MultiVariate Polygenic Mixture Model
R
6
star
6

Smiles2Dock

Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking
Python
6
star
7

FasTag

FasTag: automatic text classification of unstructured medical narratives
Jupyter Notebook
5
star
8

GlobalBiobankEngine

A resource for the visualization and exploration of genetic and phenotypic data from biobanks
HTML
4
star
9

multisnpnet-Cox

Multiresponse time-to-event Cox proportional hazards model - CPU
R
4
star
10

mrp

Repo for MRP method.
Python
3
star
11

multisnpnet-Cox_gpu

Multiresponse time-to-event Cox proportional hazards model - GPU
C++
2
star
12

mrpmm

Repo for MRPMM method
Python
2
star
13

biomarkers

Jupyter Notebook
2
star
14

sex-diff-biomarker-genetics

Bayesian Mixture Models for identifying sex-specific variants in UKBB data.
Jupyter Notebook
2
star
15

presentations

HTML
1
star
16

stratified_MR

Codebase for Wainberg et al. PLOS Med 2019 (doi.org/10.1371/journal.pmed.1002982)
Python
1
star
17

AncestryOmicsUKB

Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank
R
1
star
18

presentations-readings

Repository for lab presentations (abstracts, posters, talks) and readings.
Jupyter Notebook
1
star
19

multisnpnet-Cox-tv

Cox models for time-varying covariate in large population-cohorts
Jupyter Notebook
1
star
20

degas-risk

Polygenic risk modeling with latent trait-related genetic components
Jupyter Notebook
1
star