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covid19
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.public-resources
Repository for resources we'd like to share with the community.snpnet
snpnet - Efficient Lasso Solver for Large-scale genetic variant dataukbb-tools
Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank datamvpmm
MultiVariate Polygenic Mixture ModelSmiles2Dock
Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular dockingFasTag
FasTag: automatic text classification of unstructured medical narrativesGlobalBiobankEngine
A resource for the visualization and exploration of genetic and phenotypic data from biobankssemm
Sex Effects Mixture Model for GWAS summary statisticsmultisnpnet-Cox
Multiresponse time-to-event Cox proportional hazards model - CPUmrp
Repo for MRP method.multisnpnet-Cox_gpu
Multiresponse time-to-event Cox proportional hazards model - GPUbiomarkers
sex-diff-biomarker-genetics
Bayesian Mixture Models for identifying sex-specific variants in UKBB data.presentations
stratified_MR
Codebase for Wainberg et al. PLOS Med 2019 (doi.org/10.1371/journal.pmed.1002982)AncestryOmicsUKB
Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobankpresentations-readings
Repository for lab presentations (abstracts, posters, talks) and readings.multisnpnet-Cox-tv
Cox models for time-varying covariate in large population-cohortsdegas-risk
Polygenic risk modeling with latent trait-related genetic componentsLove Open Source and this site? Check out how you can help us