reyesaldasoro/caiman

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Created about 5 years ago
Updated about 4 years ago

reyesaldasoro/caiman

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Cancer Image Analysis

HeLa-Cell-Segmentation

Segmentation, Measurement and Visualisation of Nuclear Envelope of HeLa Cells observed with Electron Microscope

shading-correction

Remove shading (or the un-even intensity background) of images

Texture-Segmentation

Volumetric Texture Segmentation by Discriminant Feature Selection and Multiresolution Classification

boxPlot3D

Create three-dimensional boxplots in Matlab

HeLa_Segmentation_UNET2

Segmentation of HeLa cells with UNET

Legofy

Matlab: Convert a normal image (or internet image) into Lego-style, similar to https://github.com/JuanPotato/Legofy

Scale-Space-Vessel-Tracing

Tracing of the centrelines of microvasculature using a scale-space algorithm

PubMed-Data-Mining-And-Visualisation

Visualisation and data mining of the public database of biomedical literature PubMed

ElectroPalatography

Processing, Analysis and Visualisation of Phonetics and Electropalatography

fractures

Phoneme_UNET

Phonetic Segmentation with U-Net

Vascular-Permeability

Calculation of Vascular Permeability and Patlak Analysis of micro vessels

Cell-Migration

Analyse and measure migration in Scratch Wound Assays

removeLineArtefact

Images from microscopes may have, in some cases, some line artefacts, that is, they show different intensities in some lines, not present in the original sample. This algorithm removes those lines.

TumourMicroenvironmentModels

Electrocardiogram

Third place in the MATLAB Online Live Editor Challenge 2018

multiresolution-texture-segmentation

Volumetric Texture Segmentation by Discriminant Feature Selection and Multiresolution Classification http://dx.doi.org/10.1016/j.patcog.2005.12.003

object-track

Tracking of objects, especially Artemia Franciscana

detectPanelOverlap

Detect if a panel overlaps with another panel within a figure

microtubules

Analysis of microtubules of migrating cells

GlisteningDetection

Detect Glistenings

QualityChestXray

Obtain a metric of quality of a Chest Xray based on the contrast between lungs and surrounding structures

GuideZotero

A simple user guide to Zotero

Quantify-Protein-Expression

Quantification of Protein Expression and Nuclei counting from 4-channel fluorescent arteries

RingFluorescence

Detect a Ring of Fluorescence

ThreeD_Fluorescence

Stitch-Images

Matlab Routines to stitch four images (Quadrants)

Gems

Jupyter Notebook

BiomedicalImageAnalysisRecipesMatlab

Some of the images and code related to the book "Biomedical Image Analysis Recipes in MATLAB"

ARC

NeutroPlasticity

phonemeMap

Change weights of a phoneme map

Arterial-Fenestrae

Segmentation of Fenestrae from Internal Lamina of Arteries

PhagoSight

PhagoSight: an open-source MATLAB package for the analysis of neutrophils and macrophage migration

MitoEM

Graphics

Create graphics with Matlab

Microvessel-Segmentation

An automatic algorithm for the segmentation and morphological analysis of microvessels in immunostained histological tumour sections

Chromatic-Analysis

Chromatic Analysis of (R,G,B) images converted to (H,S,V)