refresh-bio/kmer-db

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83
Rank 392,854 (Top 8 %)
Language
C++
License
GNU General Publi...
Created almost 7 years ago
Updated about 1 month ago

refresh-bio/kmer-db

refresh-bio

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Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

KMC

Fast and frugal disk based k-mer counter

agc

Assembled Genomes Compressor

FAMSA

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

SPLASH

DSRC

DSRC - DNA Sequence Reads Compressor

colord

A versatile compressor of third generation sequencing reads.

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

PHIST

Phage-Host Interaction Search Tool

Whisper

VCFShark

ORCOM

Overlapping Reads COmpression with Minimizers

GTC

GenoTypes Compressor

FaStore

FaStore - high-performance FASTQ files compressor

fqsqueezer

FQSqueezer - FASTQ compressor based on k-mer statistics

protestar

Protein Structure Archiver

RADULS

Ultra fast MSD radix sorter

RECKONER

GDC2

Genome Differential Compressor 2

CoMSA

Compressor of multiple sequence alignments data

clusty

GTShark

GTShark: Genotype compression in large projects

LZ-ANI

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes

MuGI

Multiple Genome Index

QuickProbs

Accurate algorithm for the multiple sequence alignment.