reconhub/projections

Stars
14
Rank 1,438,076 (Top 29 %)
Language
R
License
Other
Created over 7 years ago
Updated over 1 year ago

reconhub/projections

reconhub

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Projections of future incidence

covid19hub

Community-driven COVID-19 analytics in R

incidence

☣📈📉☣ Compute and visualise incidence

learn

RECON learn: a free, open platform for training material on epidemics analysis

outbreaker2

Disease outbreak reconstruction from epidemiological and genetic data

reconhub.github.io

Official website for RECON - The R Epidemics CONsortium

linelist

An R package to import, clean, and store case data

epiflows

☣✈️ Risk assessment of travel-related disease spread

trendbreaker

Analysing epidemic trends using AutoML approaches.

epicontacts

Handling, Visualisation and Analysis of Epidemiological Contacts

aweek

Convert dates to arbitrary week definitions 📆

epitrix

Small Helpers and Tricks for Epidemics Analysis

deployer

Self-contained R environment on a thumb drive

earlyR

Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.

report_factories_templates

Templates of report factories

docker

Various docker images for RECON

phylo-practical

Introduction to phylogenetics using R, using influenza virus sequences

dibbler

Investigation of food-borne disease outbreaks

matchmaker

Dictionary-based cleaning for categorical variables

nomad

📦👉🎒 Pack up R to take away

simulacr

Helper functions for outbreak simulation

guides

Recon's guidelines for writing statistical analyses reports

datacomparator

Shiny app for comparing 2 versions of a dataset

distcrete

📈👉📊 Discretise distributions

occupancy

WIP - Forecast hospital bed occupancy from data on admissions and length of stay

rfextras

reconhub

All stable packages from RECON

recon-helpdesk

Open an issue in this repository if you have general questions about RECON packages

gisfirstaid

A collection of code gists for mapping infectious diseases

epimaps

recon.ui

Template shiny GUI for RECON packages

vimes

Visualisation and monitoring of epidemics

rmd-example

Short Rmarkdown example, using a simple analysis of incubation period in simulated Ebola outbreak

epicookbook

A cookbook of epidemiological models in R

talks

Material for RECON talks distributed under CC-BY

rubus

introduction-to-r-stegen

tasks

hackfest1

RECON hackfest 1

argus

Helpers for WHO's Argus

drat

📦📦📦 drat repository

msf-sitrep

Sitrep template for MSF

EOIM-Copenhagen

EPIET Outbreak Investigation Module: Copenhagen

branchr

R Estimation from Cluster Sizes

recontools

Tools to develop RECON packages

course-malta-2018

website for RECON short course in Malta 2018

ESCAIDE_2019_workshop

The website of the R workshops for ESCAIDE 2019