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covid19hub
Community-driven COVID-19 analytics in Rincidence
☣📈📉☣ Compute and visualise incidencelearn
RECON learn: a free, open platform for training material on epidemics analysisoutbreaker2
Disease outbreak reconstruction from epidemiological and genetic datareconhub.github.io
Official website for RECON - The R Epidemics CONsortiumlinelist
An R package to import, clean, and store case dataepiflows
☣✈️ Risk assessment of travel-related disease spreadtrendbreaker
Analysing epidemic trends using AutoML approaches.epicontacts
Handling, Visualisation and Analysis of Epidemiological Contactsaweek
Convert dates to arbitrary week definitions 📆projections
Projections of future incidenceepitrix
Small Helpers and Tricks for Epidemics Analysisdeployer
Self-contained R environment on a thumb driveearlyR
Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.report_factories_templates
Templates of report factoriesdocker
Various docker images for RECONphylo-practical
Introduction to phylogenetics using R, using influenza virus sequencesdibbler
Investigation of food-borne disease outbreaksmatchmaker
Dictionary-based cleaning for categorical variablesnomad
📦👉🎒 Pack up R to take awaysimulacr
Helper functions for outbreak simulationguides
Recon's guidelines for writing statistical analyses reportsdatacomparator
Shiny app for comparing 2 versions of a datasetdistcrete
📈👉📊 Discretise distributionsoccupancy
WIP - Forecast hospital bed occupancy from data on admissions and length of stayrfextras
reconhub
All stable packages from RECONrecon-helpdesk
Open an issue in this repository if you have general questions about RECON packagesgisfirstaid
A collection of code gists for mapping infectious diseasesrecon.ui
Template shiny GUI for RECON packagesvimes
Visualisation and monitoring of epidemicsrmd-example
Short Rmarkdown example, using a simple analysis of incubation period in simulated Ebola outbreakepicookbook
A cookbook of epidemiological models in Rtalks
Material for RECON talks distributed under CC-BYrubus
introduction-to-r-stegen
tasks
hackfest1
RECON hackfest 1argus
Helpers for WHO's Argusdrat
📦📦📦 drat repositorymsf-sitrep
Sitrep template for MSFEOIM-Copenhagen
EPIET Outbreak Investigation Module: Copenhagenbranchr
R Estimation from Cluster Sizesrecontools
Tools to develop RECON packagescourse-malta-2018
website for RECON short course in Malta 2018ESCAIDE_2019_workshop
The website of the R workshops for ESCAIDE 2019Love Open Source and this site? Check out how you can help us