reconhub/argus reconhub/argus

  • Stars
    star
    1
  • Language
    R
  • Created over 7 years ago
  • Updated over 5 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
reconhub/argus
github

reconhub

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Helpers for WHO's Argus

More Repositories

1

covid19hub

Community-driven COVID-19 analytics in R
58
star
2

incidence

☣📈📉☣ Compute and visualise incidence
R
58
star
3

learn

RECON learn: a free, open platform for training material on epidemics analysis
HTML
35
star
4

outbreaker2

Disease outbreak reconstruction from epidemiological and genetic data
R
30
star
5

reconhub.github.io

Official website for RECON - The R Epidemics CONsortium
R
29
star
6

linelist

An R package to import, clean, and store case data
R
25
star
7

epiflows

☣✈️ Risk assessment of travel-related disease spread
R
18
star
8

trendbreaker

Analysing epidemic trends using AutoML approaches.
R
17
star
9

epicontacts

Handling, Visualisation and Analysis of Epidemiological Contacts
R
15
star
10

aweek

Convert dates to arbitrary week definitions 📆
R
15
star
11

projections

Projections of future incidence
R
14
star
12

epitrix

Small Helpers and Tricks for Epidemics Analysis
R
10
star
13

deployer

Self-contained R environment on a thumb drive
R
9
star
14

earlyR

Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.
R
9
star
15

report_factories_templates

Templates of report factories
R
8
star
16

docker

Various docker images for RECON
8
star
17

phylo-practical

Introduction to phylogenetics using R, using influenza virus sequences
TeX
8
star
18

dibbler

Investigation of food-borne disease outbreaks
HTML
7
star
19

matchmaker

Dictionary-based cleaning for categorical variables
R
7
star
20

nomad

📦👉🎒 Pack up R to take away
R
7
star
21

simulacr

Helper functions for outbreak simulation
R
5
star
22

guides

Recon's guidelines for writing statistical analyses reports
HTML
5
star
23

datacomparator

Shiny app for comparing 2 versions of a dataset
R
5
star
24

distcrete

📈👉📊 Discretise distributions
R
4
star
25

occupancy

WIP - Forecast hospital bed occupancy from data on admissions and length of stay
R
4
star
26

rfextras

R
4
star
27

reconhub

All stable packages from RECON
R
3
star
28

recon-helpdesk

Open an issue in this repository if you have general questions about RECON packages
3
star
29

gisfirstaid

A collection of code gists for mapping infectious diseases
HTML
3
star
30

epimaps

R
3
star
31

recon.ui

Template shiny GUI for RECON packages
CSS
2
star
32

vimes

Visualisation and monitoring of epidemics
R
2
star
33

rmd-example

Short Rmarkdown example, using a simple analysis of incubation period in simulated Ebola outbreak
2
star
34

epicookbook

A cookbook of epidemiological models in R
R
2
star
35

talks

Material for RECON talks distributed under CC-BY
TeX
1
star
36

rubus

1
star
37

introduction-to-r-stegen

HTML
1
star
38

tasks

1
star
39

hackfest1

RECON hackfest 1
JavaScript
1
star
40

drat

📦📦📦 drat repository
HTML
1
star
41

msf-sitrep

Sitrep template for MSF
R
1
star
42

EOIM-Copenhagen

EPIET Outbreak Investigation Module: Copenhagen
R
1
star
43

branchr

R Estimation from Cluster Sizes
R
1
star
44

recontools

Tools to develop RECON packages
R
1
star
45

course-malta-2018

website for RECON short course in Malta 2018
HTML
1
star
46

ESCAIDE_2019_workshop

The website of the R workshops for ESCAIDE 2019
CSS
1
star