realbigws/DeepSimulator

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Created about 6 years ago
Updated over 5 years ago

realbigws/DeepSimulator

realbigws

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The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

DeepAlign

DeepAlign: the protein structure analysis toolkit

PDB_Tool

Extract structural features from original PDB file

Predict_Property

Predict protein local properties using sequence or profile information.

cwDTW

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

RaptorX_Property_Fast

RaptorX-Property: a Standalone Package for Protein Structure Property Prediction

DeepCNF_AUC

Training Conditional Random Fields (CRF) by Maximizing Area Under the ROC Curve (AUC)

DeepBound

Predict the boundary of transcript start and end from RNA-seq reads alignment

LIG_Tool

Extract ligands from original PDB file

TGT_Package

Generate A3M and TGT file from a given sequence in FASTA format.

cwDTW_nano

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping in nanopore sequencing analysis

Complex_Tool

Extract monomer and contact info from complex PDB file

DeepOpen_source

All relevant source code for protein related tools

From_CA_to_FullAtom

Given CA trace in PDB format, restore full atoms

curl_command

CURL command to call RaptorX-Property and RaptorX-Contact locally