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reactome2py
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.ReactomeGSA
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysisgraph-core
Models the Reactome knowledgebase into a interconnected graphcontent-service
The new Reactome REST API to access the datacontainer
🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧ReactomeGSA-tutorials
Tutorials on how to use the ReactomeGSA R package.graph-importer
Converts the Reactome knowledgebase into a interconnected graphReactomeGraph4R
R package for interfacing with a Reactome Graph Databasedescartes_rpa
interaction-exporter
Exports molecular interactions inferred from Reactome contentRelease
Code and website structure for a release serverWebsite
Contains the code and configuration for the websitegsa-backend
Backend code of the Kubernetes based ReactomeGSA Analysis Systemanalysis-service
A RESTful API to access pathway analysis toolsReactomeContentService4R
R Interface for Reactome dataBCC-2020
Repository containing supplemental files and information for the 'How to use Reactome data, tools and web service' presentation at BCC 2020.CuratorTool
The Reactome Java API for the relational database and the Curator Toolanalysis-core
Pathway enrichment and expression analysis as well as species comparison toolbiomodels-mapper
Mapping BioModels to Reactome using analysis resultsfi_network_build
This project is used to build the Reactome functional interaction network.elk-setup
Setup to use when processing logs with ElasticSearch, Logstash, & Kibanadata-export
Creates the files to be placed in the download sectionrelease-qa
A collection of tools to perform QA checks during the Release process.event-pdf
Generates the Reactome bookReactomeGSA.data
Companion data package for the ReactomeGSA R packagestatistics-generator
Cypher queries to generate automatically release statisticsgsa-frontend
release-qa-pipeline
Consolidates all Reactome release QA checks.data-content
browser-curator
A tool for visualising and interacting with pathways datarelease-data-exporter
Data-release-pipeline: Data exports for submission to NCBI, UCSC, and Europe PMCmaven-project-template
Standardized template for a Reactome maven projectReactomeGSA.report
Report generating features for the ReactomeGSA Pathway Analysis toolRESTfulAPI
Reactome content web-serviceanalysis-report
qa-server
Automated curation QA checksreport-logger
Centralises different events across various services for periodic reportrelease-update-dois
Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)data-release-pipeline
The next generation of the Reactome data release pipeline.search-core
reactome-reach-integration
disease-digester
To represent the disease-gene binary relationship with a REACTOME overlayrxn-classifier
A tool to help curators with the reactions classificationrelease-go-update
Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)logic-network-generator
graph-qa
Used to report possible data inconsistenciesLove Open Source and this site? Check out how you can help us