Discover rdmpage/grbio Open Source project by Roderic Page (@rdmpage)

C++ program to compute the maximum weighted bipartite matching of a graph

maximum-weighted-bipartite-matching

phyloinformatics

Adam Geitgey's example of using machine learning to solve CAPTCHAs

solving-captchas-code-examples

Python

graph-template-library

GTL (Graph Template Library) is a STL based library, which provides necessary classes and algorithms for the work with graphs.

Code for recon16 hack day

recon16-annotation

Javascript phylogenetic tree library

treelib-js

BBC Wildlife ontology and data

bbc-wildlife

Notes on bibliographic metadata in JSON

bibliographic-metadata-json

ozymandias-demo

Ozymandias

Big web-based phylogeny viewer

wikidata-queries

Example Wikidata queries

deep-tree

Mapping between IPNI names and bibliographic identifiers

ipni-names

Generate quickstatements for BHL content

bhl-wikidata

Evaluation of GBIF taxonomy

taxonomy-GBIF-manuscript

C++ implementation of hubs and authorities (HITS) and PageRank algorithms

hubs-and-authorities

Google Map display of DNA barcode sequences

bold-map

JSON-LD examples in the wild

wild-json-ld

Match short citations to cited works

citation-matching

Exploring citation parse using Conditional Random Fields (CRF)

citation-parsing

Shell

material-examined

Linking specimen codes to identifiers

Create cluster maps to display overlapping sets

cluster-map

bionames

BioNames project

Open access articles extracted from the Biodiversity Heritage Library

biostor

Displaying a phylogeny on a map using GeoJSON

geojson-phylogeny

Conservation International biodiversity hotspots in GeoJSON

biodiversity-hotspots

zookeys-viewer

Render ZooKeys XML

XSLT

elastic-dna-barcodes

Using Elasticsearch to analyse DNA barcodes

Clone of Nature iPhone app using jQuery Mobile

natureiphone

Natural history collections linked to Wikidata

natural-history-collections-wikidata

All Literature Electronically Catalogued

alec

Search engine for publications in Wikidata

wikicite-search

OCR correction in browser for Leiden Hackathon

ocr-correction

Import data into CouchDB "lake" and export in graph format (e.g., triples)

data-lake

Life Sciences Identifier (LSID) resolver

lsid-resolver-php

Persistent identifiers demonstrator

pid-demonstrator

dna-barcode-browser

DNA barcode browser

Tools to upload bibliographic data to Wikidata

wikidata-bibliographic-data

Simple mashup of species information

ispecies

International Barcode of Life project (iBOL) to Darwin Core

ibol-dwca

Mapping between ION names and entries in Index Animaliam

ion-sherborn

Resolving "microcitations" to full bibliographic reference

worldmaps

Maps of the world

crossref-fundref

microcitation

The Plant List version 1.1

the-plant-list-1-1

Data from World Flora Online

world-flora-online

PHP client for Mendeley API

mendeley-oapi-php

Wrap Barcode of Life Data Systems (BOLD) API

bold-api

Data for paper by Grieneisen et al. 2014 https://doi.org/10.1093/biosci/biu035

biodiversity-taxonomic-infrastructure-international-collaboration-and-new-species-discovery

imapgenes

Data from "An Anthropocene map of genetic diversity"

sloppy-io

Sloppy.io projects

biostor-annotations

Annotating BioStor using Hypothes.is

Storing PDFs of BioStor articles on the Internet Archive

biostor-internet-archive

Cloud-based version of BioStor

biostor-cloud

php-mysql-heroku

PHP app with MySQL

Harvest and repurpose RSS feeds

biorss

Generating JATS XML article markup using Javascript

javascript-jats-xml

Parse references in Wikispecies

wikispecies-parser

Harvesting and interpreting ZooBank

oz-zoobank

Data from uBio and Smithsonian on Sherborn Index Animalium

index-animalium

Extract bibliographic data from Wikispecies

oz-wikispecies

Playground for developing BioNames API

bionames-api

Data loaders for BioNames project

bionames-data

Extract figures from born-digital PDFs and render in JATS XML

pdf-figure-extraction

iBOL public DNA barcode data in GBIF

gbif-040c5662-da76-4782-a48e-cdea1892d14c

Linking Index Fungorum names to the corresponding publications

indexfungorum-publications

Data from A preliminary checklist of the freshwater snails of Sabah (Malaysian Borneo) deposited in the BORNEENSIS collection, Universiti Malaysia Sabah https://doi.org/10.3897/zookeys.673.12544

checklist-of-the-freshwater-snails-of-Sabah

journal-articles-ris

A repository of lists of articles for various biodiversity-related journals in RIS format.

electronic-gazetteer

BioLink electronic gazetteer (eGaz) files

Linked data version of Plants of the World Online

ld-powo

Feitelson's weighted clique algorithm

weighted-clique

Data lake for bibliographic data

biblio-lake

Adding data on Open Journal Systems to Wikidata

ojs-wikidata

Aggregate linked data from multiple sources

linked-data-aggregator

PHP client for Global Names Recognition and Discovery API

gnrd-php

Playing with CrossRef event data

crossref-event-hackathon

Experiments with exploring the Biodiversity Literature Repository

zenodo-blr-interface

Archives of harvested data in RDF

rdf-archive

Adding identifiers to TreeBASE studies

treebase-studies

Notes on discrete global grid systems and RDF

rdf-discrete-global-grid-systems

Linked data fragments experiments

linked-data-fragments

blazegraph-fuseki-notes

Notes on Blazegraph

Data from recent papers on Amazon plant diversity

amazon-plant-diversity

biostor-images

Extract figures and tables from BioStor articles

biostor-classic

Original BioStor site

mapping between the digitised version of Nomenclator Zoologicus from uBio, and bibliographic databases such as the Biodiversity Heritage Library (BHL)

nomenclator-zoologicus

BioStor articles marked up using Journal Archiving Tag Set

biostor-jats

Harvest Catalogue of Life JSON API

catalogue-of-life-harvest

DNA barcodes from old type specimens

dna-barcodes-old-types

XSLT

entomological-review-japan

Exploring the Biodiversity Literature Repository

biodiversity-literature-repository

Google maps-style viewer for GML files

gml-viewer

Mincut supertree program (C++)

mincut-supertree

Automatically exported from code.google.com/p/gbif-sdr

gbif-sdr

ActionScript

oz-ala-harvest

Harvest Atlas of Living Australia taxonomy

RBG Kew Google Earth files for Reducing Plant Extinction

kew-reducing-plant-extinction

greater-mekong-new-species-2016

Greater Mekong New Species 2016

gbif-geocoder-tester

Testing the use of GBIF as a geocoding service

Harvesting new taxonomic names and publications

namestream

Find'n cite - aggregate, merge, and augment bibliographic data

100

findncite