rcedgar/urmap rcedgar/urmap

  • Stars
    star
    39
  • Rank 693,563 (Top 14 %)
  • Language
    C++
  • License
    GNU General Publi...
  • Created over 4 years ago
  • Updated over 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
rcedgar/urmap
github

rcedgar

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

URMAP ultra-fast read mapper

More Repositories

1

muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
C++
135
star
2

palmscan

C++
18
star
3

palmdb

Database of virus RdRP barcode sequences
12
star
4

newick

Manipulate and generate figures for trees in Newick format
C++
11
star
5

syncmer

Validation of sycnmers compared to minimizers
C++
10
star
6

spades_circular_contigs

Python script to identify circular contigs from SPAdes assembler.
Python
7
star
7

taxxi

Taxonomy cross-validating by identity
HTML
4
star
8

rdrp_tree_experiments

Code, data and results for Muscle5 ensemble experiments on RdRp genus and phylum trees
Roff
4
star
9

renomad

Implementation of NOMAD (https://doi.org/10.1101/2022.06.24.497555)
C++
4
star
10

circuclust

Clustering and alignment for circular sequences
C++
3
star
11

palm_annot

Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
Python
3
star
12

jupiter

Generate "Jupiter" plots for circular genomes
Python
2
star
13

usearch_old_binaries

Executable files for usearch versions 5 through 11, donated to the public domain
1
star
14

balifam

Protein multiple sequence alignment benchmark
1
star
15

qscore

Compares a multiple alignment with a reference and reports accuracy scores.
C
1
star
16

simple_paired_read_simulator

A simple paired-read simulator in stand-alone Python2
Python
1
star