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omixer-rpm
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.GMMs
A manually curated database of human gut metabolic modules.QMP
Quantitative Microbiome Profilinglorepy
A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)raeslab-utils
Enterotype-prediction-based-on-the-life-history
Machine learning classification pipe-line used for the study "Long-term life history predicts current elderly gut microbiome"RLdbRDA
The RaesLab's implementation of a distance based Redundancy Analysis (dbRDA)covid19_respiratory_microbiome
Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"temporal_variability_microbiome_qmp
loreplotr
Logistic regression plots in RQMP-Microbiome-CRC-confounders
Scripts for the manuscript "Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages"BMIS
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