raeslab/GMMs

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Created over 8 years ago
Updated over 6 years ago

raeslab/GMMs

raeslab

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A manually curated database of human gut metabolic modules.

omixer-rpm

A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.

lorepy

A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)

QMP

Quantitative Microbiome Profiling

QMP-Microbiome-CRC-confounders

Scripts for the manuscript "Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages"

raeslab-utils

covid19_respiratory_microbiome

Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"

Enterotype-prediction-based-on-the-life-history

Machine learning classification pipe-line used for the study "Long-term life history predicts current elderly gut microbiome"

RLdbRDA

The RaesLab's implementation of a distance based Redundancy Analysis (dbRDA)

temporal_variability_microbiome_qmp

loreplotr

Logistic regression plots in R

dyspyosis

A python package to calculate the dysbiosis score in microbiome datasets

BMIS