qupath/embo

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qupath/embo

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QuPath workshop as part of the EMBO Advanced Methods in Bioimage Analysis course 2021

qupath

QuPath - Bioimage analysis & digital pathology

qupath-extension-stardist

QuPath extension to run StarDist nucleus detection

qupath-extension-wsinfer

QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

qupath-extension-align

QuPath extension to interactively align images

qupath-docs

QuPath documentation

models

Trained models for use with QuPath

qupath-extension-tensorflow

Use TensorFlow from QuPath

qupath-extension-omero-web

QuPath extension to work with images through OMERO's web API

2022-qupath-hackathon

From 26-29 April 2022

qupath-bioformats-extension

Extension to add Bio-Formats image support - **QuPath v0.1.2 only**

log-viewer

qupath-extension-template

Template to help create a new QuPath extension

qupath-extension-bioimageio

A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

qupath-extension-djl

A QuPath extension for working with Deep Java Library (https://djl.ai)

qupath-extension-omero

QuPath extension to work with images through OMERO's APIs

qupath-fxtras

Reusable JavaFX tools for QuPath (and beyond)

qupath.github.io

GitHub pages site

qupath-bioimage-io

QuPath resources for Bioimage.IO

qupath-extension-jpen

QuPath extension using JPen for graphics tablet input

datavizfx

qupath-matlab-extension

Extension to help set up QuPath and MATLAB together - **QuPath v0.1.2 only**

qupath-macOS-extension

Extension to enable file associations on macOS - **QuPath v0.1.2 only**