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applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020bedder-rs
an API for intersections of genomic datasllobs-biostats
STRling
Detect novel (and reference) STR expansions from short-read datavcf2db
create a gemini-compatible database from a VCFccrhtml
A small repo for storing the code for making the files and html for CCRs.pathoscore
pathoscore evaluates variant pathogenicity tools and scores.vcftidy
normalize, left-align, trim, validate and clean VCF filesccr
Building the constrained coding regions (CCR) modelbedqc
BED QC tool (in the making)mendelianerror
probability of mendelian error in trios.recombinator
Snakemake_Tutorial
vcfmerge
merge VCFshuman-rae-manuscript
code used for figure generation and statistical analysis for manuscriptceph-dnm-manuscript
Code used for figure generation and statistical analysis for https://elifesciences.org/articles/46922kmertools
STRling-nf
Nextflow implementation of STRling data flowtranscriptionary
proj-mutator-mapping
Code for reproducing analysis and figures from https://elifesciences.org/reviewed-preprints/89096Love Open Source and this site? Check out how you can help us