quinlan-lab/kmertools

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Language
Python
License
MIT License
Created about 5 years ago
Updated over 4 years ago

quinlan-lab/kmertools

quinlan-lab

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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

bedder-rs

an API for intersections of genomic data

sllobs-biostats

STRling

Detect novel (and reference) STR expansions from short-read data

vcf2db

create a gemini-compatible database from a VCF

ccrhtml

A small repo for storing the code for making the files and html for CCRs.

pathoscore

pathoscore evaluates variant pathogenicity tools and scores.

vcftidy

normalize, left-align, trim, validate and clean VCF files

ccr

Building the constrained coding regions (CCR) model

bedqc

BED QC tool (in the making)

mendelianerror

probability of mendelian error in trios.

recombinator

Snakemake_Tutorial

vcfmerge

human-rae-manuscript

code used for figure generation and statistical analysis for manuscript

Jupyter Notebook

ceph-dnm-manuscript

Code used for figure generation and statistical analysis for https://elifesciences.org/articles/46922

Jupyter Notebook

STRling-nf

Nextflow implementation of STRling data flow

mendacity

language-agnostic testing for inheritance models

transcriptionary

proj-mutator-mapping

Code for reproducing analysis and figures from https://elifesciences.org/reviewed-preprints/89096