Discover pwwang/pipen-cli-init Open Source project by @pwwang

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Created about 3 years ago
Updated 4 months ago

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A pipen CLI plugin to create a pipen project (pipeline)

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Add a set of useful filters for pipen templates.

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immunopipe-example

An example of immunopipe

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pipen-cli-require

Checking the requirements for processes of a pipeline

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pipen-annotate

Use docstring to annotate pipen processes

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Echo script output to PyPPL logs

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pyppl_rich

Richer information in logs for PyPPL

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pyppl_export

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datar-blog

A blog about datar

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pyppl_runcmd

Allowing to run local command before and after each process for PyPPL

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pipen-log2file

Save running logs to file for pipen

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pygff

A more general GFF/GTF parser.

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remotedata

Accessing and caching remote data.

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pyppl_strict

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pyppl_jobtime

Job running time statistics for PyPPL

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pyppl_lock

Preventing running processes from running again for PyPPL

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pyppl_runners

Some basic runners for PyPPL

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pipen-lock

Process lock for pipen to prevent multiple runs at the same time

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pyppl_flowchart

Generating flowchart for PyPPL

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pyppl_notify

Email notification for PyPPL

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Generate running information for jobs in pipen pipelines.

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conda-jvarkit

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pyppl_annotate

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pipen-board

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pipen-cli-run

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pyppl_context

Upstream and downstream process reference for PyPPL

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pyppl_require

Process requirement manager for PyPPL

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pwwang/pipen-cli-init

pwwang

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