Top Rating
- Top Contributors
  Discover the Top Open Source contributors by country or by language
- Interviews
  Discover real stories from Open Source developers
Discover

Discover your Favorite Language
Discover the top trending repositories and projects on Github. Explore the latest trends in your preferred languages.

PHP

HTML

C++

Kotlin

OCaml

C

Assembly

Python

More Languages
Awesome

Awesome repositories
Discover the most awesome repositories and projects of your favorite languages. Inspired by the Awesome-* lists trend in GitHub.

F#

Kotlin

Elixir

JavaScript

Ada

C

Nix

Clojure

More Languages
By Country

Rankings by Country
Discover the community of talented open source contributors in each country.

🇸🇪 Sweden

🇦🇬 Antigua and Barbuda

🇺🇬 Uganda

🇪🇷 Eritrea

🇪🇨 Ecuador

🇸🇬 Singapore

🇸🇻 El Salvador

🇨🇳 China

All Countries Compare Countries

psa-lab/SimSite3D

Stars
11
Rank 1,694,829 (Top 34 %)
Language GLSL
License
GNU General Publi...
Created over 6 years ago
Updated about 6 years ago

psa-lab/SimSite3D

psa-lab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

The SimSite3D Software tools are designed to quickly search a database of three dimensional structures, in Protein Data Bank format, with protein-ligand binding sites to determine which binding sites in the database have steric and chemical similarities to the query binding site.

ProFlex

MSU ProFlex (formerly called FIRST) predicts the rigid and flexible regions in a protein structure, given a Protein Data Bank (PDB) file including hydrogen atoms.

SLIDE

SLIDE is a computational screening and flexible docking tool designed to discover ligands with good steric and chemical complementarity to the known three-dimensional structure of a protein's binding site.

Consolv

A tool for predicting whether water molecules bound to the surface of a protein are likely to be conserved or displaced in other, independently-solved crystallographic structures of the same protein

Sequery

Sequery is a tool to search the sequences of the protein structures in the Protein Data Bank (PDB) for a particular pattern of residues, which may include exact matches and acceptable substitutions based on a user-specified amino acid substitution matrix and/or a numerical threshold.

Protein-Alignment-Tool

BRAT shows key residue (e.g., ligand-binding) correspondences between sequence-divergent homologs aligned by structural superposition. BAT displays residues and their numeric properties (from the B-value column) of PDB structures, given their structural superposition.

WatCH

WatCH is a tool for the calculation of conserved water sites in a series of related structures in Protein Data Bank files.