Discover poldrack/reproducible-coding-workshop Open Source project

126

pytest_tutorial

simple pytest tutorial

A VM setup for use in fMRI analysis and education

fmri-analysis-vm

code related to the OpenFMRI project

openfmri

Shell

narps

Code for 2nd edition of fMRI analysis handbook

fmri-handbook-2e-code

Code for the myconnectome project

myconnectome

Python interface to NHANES dataset

nhanes

Notebooks to introduce R users to Python

PythonForRUsers

python code for data processing

python

talks-RunningALab

talks on running a lab

Code and data for AI-assisted coding experiments

ai-coding-experiments

A minimal example of a data analysis using continuous integration via Github actions

cogat

Cognitive Atlas

Web Ontology Language

ci-analysis-minimal-example

code and data from Latent Structure modeling paper

LatentStructure

Shell

myconnectome-vm

Virtual machine setup for MyConnectome data analysis

talks-template

A template for Markdown-based talks using Quarto

PredictionCV

Notebook outlining issues around slice timing correction and event onsets in fMRIPrep

SliceTimingCorrection

Python implementation of beta series extraction for fMRI data

pybetaseries

fmriqa

qa scripts for fMRI data

Python implementation of EZ-diffusion model by Wagenmakers et al.

ezdiff

An exploration of the effects of crossvalidation schemes on regression

regressioncv

Teaching code related to fMRI statistics

fmri-stats

Guide to open science practices for psychology

psych-open-science-guide

talks-Neurohackademy

Neurohackademy talk

Materials for BBSRC Meeting presentation on reproducible workflows

reproducible-workflows

automated grading system for Rmd files

r-autograder

generic task using psychopy

pytask

code to parse zeo data files

zeodata

analyses of Genetics of Brain Structure (GOBS) dataset

GOBS

Talk about the NiPreps software ecosystem

talks-nipreps

notebooks and code for Psych 154, Judgment and Decision Making

criminalprediction

jdm

Project to maintain a database for CV/website rendering

academicdb

data science for barbecue

bbq

Power analysis for Nature Reviews Neuroscience review

power_nrn

Code to generate RT model code for Poldrack (2014), Developmental Cognitive Neuroscience

rtmodel

analytics on ohbm 2011 abstracts

ohbm2011

Example of a reinforcement learning model

reinforcement_learning_example

new implementation of the PubBrain visualization tool

PubBrain

convert cognitive atlas dumps into neo4j graph database

cogat-neo4j

Simulation of brain-behavior correlations

corrsim

poldrack.github.io

Main repo for web site

code to text various methods for inferring latent structure from multivariate data

StructureRetrieval

talk about making cognitive neuroscience open and reproducible

talks-MakingCogNeuroOpenReproducible

Talk about the future of open neuroscience

talks-FutureOpenNeuroscience

examples of open science projects

BBSRC-git-demo

testing demo

open_science_examples

Example analyses of MyConnectome data

IID_analysis

analysis of IID data

myconnectome-examples

clean_coding

example of classification using n-back task data from myconnectome

fmri-classification-example

a very lightweight interface to the Slurm job scheduler

PySlurmLite

A python package for representing and processing freesurfer data

py-freesurfer

dtiqa

dti quality assurance

cognitive-encoding-models_multitask_RP

talk on making neuroimaging more reproducible

open-neuroimaging-format

launch

fmri-sim

talks-NeuroimagingReproducibility

encoding models for cognitive functions

cognitive_encoding_model

Talk on incentiving good science from the top

talks-IncentivingGoodScience

Hands-on tutorials for R programming, developed for use with http://statsthinking21.org

learnr_demos

Makefile

pliers-docker

Docker setup for pliers

code related to Connectome Workbench

wbench

A repository for analysis code and data for my study

study-1_analysis

testing

this is just a test

stopping

stop signal modeling

Repo for docker container to build books (R and Python)

statsthinking21-docker

Dockerfile

fmritopics

code for topic modeling of fMRI literature