physimals/quantiphyse-docs

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physimals/quantiphyse-docs

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Documentation for Quantiphyse

quantiphyse

Application for analysis and modelling of volumetric medical imaging data

hcp-asl

ASL pipeline for the Human Connectome Project

oxford_asl

A command line tool for quantification of perfusion from ASL data

oxasl

Python based ASL pipeline based on oxford_asl

fabber_core

Framework for Bayesian model fitting using the Variational Bayes method and pluggable forward models

verbena

Vascular Model Based Perfusion Quantification for DSC-MRI

svb

Implementation of Stochastic Variational Bayes

fabber_models_dce

DCE models for the Fabber model fitting tool

quantiphyse-sv

Supervoxels plugin for Quantiphyse

dcm_convert_phillips

Custom script to convert ASL DICOM files from Phillips scanners which do not go through DCM2NIIX properly

vaby_models_asl

ASL models for VABY framework

svb_models_asl

ASL Models for Stochastic Variational Bayes inference framework

quantiphyse-asl

Quantiphyse plugin for ASL-MRI data

vaby_avb

Python implementation of Analytic Variational Bayesian inference for a nonlinear forward model

nmedia_vb_tutorial

Jupyter Notebook

asl_mfree

Model-free deconvolution for multi-TE ASL data

vervain

Python based DSC processing pipeline intended to be largely compatible with Verbena

fabber_models_asl

Forward models using the Fabber framework for Arterial Spin Labelling MRI

oxasl_ve

OXASL plugin for vessel-encoded ASL data

fabber_models_dwi

Fabber models for diffusion weighted imaging

fabber_models_cest

CEST model for the Fabber model fitting tool

vb_tutorial

Variational Bayes tutorial materials, using analytic and stochastic methods

Jupyter Notebook

vaby_svb

Stochastic variational bayes using the vaby framework

quantiphyse-datasim

Quantiphyse plugin for general perfusion imaging simulation

vaby

Core variational bayes code in Python to be shared between SVB and AVB