philippbayer/Bioinformatics-tools

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Created over 12 years ago
Updated over 12 years ago

philippbayer/Bioinformatics-tools

philippbayer

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Small repo with tiny scripts used in bioinformatics

Things-a-scientist-is-suppposed-to-know

A comprehensive and long list of things a modern scientist is supposed to know

submission_checklist

A checklist to help you avoid all those minor errors when submitting a scientific manuscript

Goodreads_visualization

A Jupyter notebook where I play with my Goodreads data

orthomclToVenn

Creates Venn diagrams for OrthoMCL output

CV

My curriculum vitae.

R_gene_analysis

Linking disease resistance gene numbers with yield in soybean

turbo-shame

Once upon a time, there was a bioinformatics summer project which involved the translation of HIV and SIV nucleotide sequences. It was for @gedankenstuecke and me the first time we coded for longer than 5 lines. This is it. Warning: It's terrible.

machine_learning_notebooks

This is where I store Jupyter notebooks for machine learning/PMLG/Kaggle

Jupyter Notebook

EcologyMaps

Trying to map european open data to the map of europe using Rails

FreakquenzyRecords

This is a reboot of the old frqtest, using a bit more rails-magic

contigPlacer

A simple program to place unplaced contigs based on (Skim)GBS data.

Labflags_analysis

Jupyter Notebook

flatland-plots

Plotting the two-dimensional beings of Abbott's Flatland (1884).

opensnp28c3

The slides for our presentation of openSNP/personal genomics at the 28c3

dirty_data

Dirty data to teach data cleaning in R

PASW-SPSS-parser

Just a small parser for the tab-delimited output of PASW

OcOmCompareAquamaps