phasegenomics/juicebox_scripts

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Python
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GNU Affero Genera...
Created almost 6 years ago
Updated over 3 years ago

phasegenomics/juicebox_scripts

phasegenomics

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A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats

FALCON-Phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

hic_qc

A (very) simple script to QC Hi-C data.

matlock

Simple tools for working with Hi-C data

polar_star

long-read depth breaking

update_assembly

Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase

annotation_mover

Script for porting annotations from one set of scaffolds (usually chromosome-scale scaffolds) to another set of scaffolds generated from the exact same set of contigs.