• Stars
    star
    13
  • Rank 1,468,526 (Top 30 %)
  • Language
    Jupyter Notebook
  • Created almost 4 years ago
  • Updated 4 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Repo that groups utility functions for e.g. plotting of Conformal prediction metrics

More Repositories

1

sciluigi

A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular
Python
331
star
2

plaid

PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.
Jupyter Notebook
12
star
3

robotlab

Cell painting and imaging with robots
Python
9
star
4

phil_LNP_modelling

Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"
Jupyter Notebook
9
star
5

cellprofiler-docker

Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image
Dockerfile
8
star
6

CP-Chem-MoA

Jupyter Notebook
7
star
7

imagedb

Image database for pharmbio microscope images
JavaScript
5
star
8

aros

Open Automated Robotic System for Biological Laboratories
5
star
9

LC-MS-Pachyderm

Start-to-end LC-MS-analysis workflow definition on Pachyderm
Shell
5
star
10

ptp-project

Project Source Code Repository for the project "Predicting Off-Target Binding Profiles with Confidence using Conformal Prediction"
TeX
5
star
11

dl_quantmap

Deep learning implementation of quantmap method
Jupyter Notebook
5
star
12

SCPRegression

Code for Synergy Conformal Prediction for Regression
Python
5
star
13

bioimg-sciluigi-casestudy

An automated virtual machine setup, containing a use case for running workflows written in SciLuigi
Python
4
star
14

robotlab-labrobots

Web server to our LiCONiC incubator and BioTek washer and dispenser
Python
4
star
15

urisolve

A simple web server enabling resolving RDF URIs based on data in a RDF HDT file, or a SPARQL endpoint
Go
4
star
16

kubeflow-pipelines

Python
3
star
17

pharmbio-web

The Static (Hugo) website for pharmb.io
JavaScript
3
star
18

robot_lab_cameras

Setup for the live stream monitoring cameras of the robot lab
HTML
2
star
19

big-data_deeplearning

Big data course, Deep learning repo
Jupyter Notebook
2
star
20

clamp

Perl
2
star
21

pharmbio-notebook

Docker containers for interactive notebook environments for rancher cluster
Dockerfile
2
star
22

cplogd

Code related to the conformal prediction log D project
CSS
2
star
23

robot-imager

IMX imaging using the PreciseFlex robot arm and LiCONiC fridge
Python
2
star
24

big-data_course

Material for the Big Data in life science course
TeX
2
star
25

robot-cellpainter

Cell painting using the UR robot arm
Python
2
star
26

scipipe-demo

Demonstrator workflows for the SciPipe paper in GigaScience
Go
2
star
27

kensert_CNN

Jupyter Notebook
2
star
28

covid19-ptp

Predicted Target Profile towards proteins of interest for Covid-19
Go
1
star
29

mdr

Portal for multi-drug resistant bacteria
Perl
1
star
30

nondisc-acp

Aggregated Conformal Prediction on non-disclosed dataset
CSS
1
star
31

MTBLS233-Pachyderm

Scalable and reproducible metabolomics preprocessing workflow powered by Pachyderm
1
star
32

incubator-automation

incubator-automation
Python
1
star
33

PB-seq_2019_L9_machine_learning

1
star
34

pbcharts

Chart repository for Helm
Smarty
1
star
35

shaker-robot

Shaker robot modifications and code
Python
1
star
36

helm-charts

Mustache
1
star
37

kensert_rf_sparse

Python
1
star
38

labrobots-restserver-washer-dispenser

This repo is replaced with https://github.com/pharmbio/robotlab-labrobots and will be archived or deleted.
Python
1
star
39

ai4dd

Material for the course AI for drug discovery
Jupyter Notebook
1
star
40

KT_LUPI

Knowledge transfer LUPI
Python
1
star
41

labrobots-restserver

This repo is replaced with https://github.com/pharmbio/robotlab-labrobots and will be archived or deleted.
Python
1
star
42

cplogd-v2.0

cpLodD version 2.0 - using ChEMBL v33
Jupyter Notebook
1
star
43

nw-cp

A master thesis on network analysis approach using morphological profiling of chemical perturbation
HTML
1
star
44

assay-transition-study

Code used for running the experiments of the Assay transition study
Java
1
star