petrelharp/slim_benchmarks

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Created over 5 years ago
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petrelharp/slim_benchmarks

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local_pca

Methods for examining PCA locally along the genome.

r-markdown-tutorial

A short tutorial on using R + markdown

euroibd

Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.3815

popbio

a short graduate population biology course

Jupyter Notebook

bio_610B

Course materials for Advanced Biological Statistics II, Bio 610B, at the University of Oregon.

landsim

efficient, forwards-time simulation of populations on raster-based landscapes

templater

Some tools for writing and compiling reports in R+markdown.

coaltheory

Notes on coalescent theory, ostensibly for BISC 577 (a grad class at USC).

ftprime_ms

math578b

course material for Computational Molecular Biology

tskit_intro

Introduction to tree sequences

popgen-visualization-course

typography

latex -> html stuff

isolation_by_coalescence

divmat

skelml

Skeleton for a repository that automatically updates a web page from latex source.

asn_2016

A talk from the ASN meeting, January 2016.

abnormal_quant_gen

landscape_geometry

investigations of how real landscape geometries affect adaptation

popassembly

corvallis-jan-2024

treestats_ms

spatial_selection

Material for two papers on spatial selection.

tortoisescape

linear-sde-lyapunov

R code to find by simulation Lyapunov exponents for linear SDE.