peterk87/sistr_web_analyze

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Apache License 2.0
Created over 8 years ago
Updated over 8 years ago

peterk87/sistr_web_analyze

peterk87

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Perform SISTR analysis of genome FASTA files through the SISTR REST API using Python requests

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Nextflow workflow syntax highlighting and snippets for Sublime Text 4

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Influenza genome analysis Nextflow workflow

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Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.

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Automated Oligonucleotide Design Pipeline (AODP) from https://bitbucket.org/wenchen_aafc/aodp_v2.0_release/

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Subtype Salmonella enterica subsp. enterica serovar Heidelberg genomes using an in-silico 33 bp k-mer subtyping method developed by Genevieve Labbe, Roger Johnson, et al from the Public Health Agency of Canada.

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Nextflow workflow to preprocess and trim primers from Paragon Genomics SARS-CoV-2 CleanPlex Illumina sequence data.

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