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sublime-nextflow
Nextflow workflow syntax highlighting and snippets for Sublime Text 4nf-flu
Influenza genome analysis Nextflow workflowfilter_classified_reads
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.nf-virontus
Oxford Nanopore reference mapping, taxonomic classification, de novo assembly workflow primarily for viral sequence datashiptv
Standalone HTML interactive phylogenetic tree visualization powered by Phylocanvas and Javascriptnf-villumina
Generic viral Illumina sequence analysis pipelineirma
Iterative Refinement Meta-Assemblernf-illmap
Nextflow workflow for Illumina read mapping, variant calling and consensus sequence generation using Snippyviral_verify
xlavir
Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflowsaodp
Automated Oligonucleotide Design Pipeline (AODP) from https://bitbucket.org/wenchen_aafc/aodp_v2.0_release/sistr_web_analyze
Perform SISTR analysis of genome FASTA files through the SISTR REST API using Python requestsheidelberg_subtyping
Subtype Salmonella enterica subsp. enterica serovar Heidelberg genomes using an in-silico 33 bp k-mer subtyping method developed by Genevieve Labbe, Roger Johnson, et al from the Public Health Agency of Canada.nf-cleanplex-preprocess
Nextflow workflow to preprocess and trim primers from Paragon Genomics SARS-CoV-2 CleanPlex Illumina sequence data.nf-iav-ont
blast2xl
BLAST XLSX Report Creator and Sequence Sorterirma-singularity
2019-04-08-nextflow-presentation-reveal-cljs
Intro presentation on Nextflow given 2019-04-08Love Open Source and this site? Check out how you can help us