peterjc/picobio

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44
Rank 634,578 (Top 13 %)
Language
Python
License
MIT License
Created over 13 years ago
Updated about 1 year ago

peterjc/picobio

peterjc

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Miscellaneous Bioinformatics scripts etc mostly in Python

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

flake8-black

flake8 plugin to run black for checking Python coding style

galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

backports.lzma

Backport of Python 3.3's standard library module lzma for LZMA/XY compressed files

mediawiki_to_git_md

Convert a MediaWiki export XML file into MarkDown as a series of git commits

flake8-rst-docstrings

flake8 plugin to validate Python docstrings as reStructuredText (RST)

longsight

Python code for capturing images from a webcam etc

pico_galaxy

Galaxy tools and wrappers for sequence analysis

maf2sam

Convert MIRA Assembly Format (MAF) to Sequence Alignment/Map (SAM) format

thapbi-pict

Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool

flake8-sfs

Python flake8 plugin for String Formatting Style (SFS)

galaxy_mira

Galaxy wrappers for MIRA assembler

peterjc.github.io

Obsolete test for mediawiki to markdown conversion for GitHub Pages with Jekyll

tarball2git

Simple Python script to take a set of versioned tar balls and import them into a git repository

split-dist

Unofficial repository for Thomas Mailund's tool Split-Dist (sdist)

blast_max_target_seqs

Reproducible test case for the "-max_taget_seqs issue" found by Sujai Kumar in Dec 2015.

ccn

Coupled Cell Networks