pcarbo/mr-ash pcarbo/mr-ash

  • Stars
    star
    1
  • Language
    R
  • Created over 5 years ago
  • Updated almost 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
pcarbo/mr-ash
github

pcarbo

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A simple implementation of the "multiple regression adaptive shrinkage" model, with examples.

More Repositories

1

lbfgsb-matlab

A MATLAB interface for L-BFGS-B
Fortran
51
star
2

varbvs

Large-scale Bayesian variable selection for R and MATLAB.
R
42
star
3

cfw

R code implementing QTL mapping of physiological, behavioral and gene expression phenotypes in Carworth Farms White (CFW) outbred mice.
R
8
star
4

ppi-f1-gwas

R code implementing QTL mapping of prepulse inhibition phenotypes in F1 crosses of common inbred mouse strains
R
5
star
5

pcarbo

Source code I have shared and analyses I have done.
R
5
star
6

lps

Analysis of LPS (bulk) RNA-seq data from Chevrier lab.
R
4
star
7

QTLRel

R package for mapping quantitative trait loci in experimental crosses such as advanced intercross lines where relatedness among individuals should not be ignored.
R
4
star
8

dotfiles

Files for setting up shell environment on my MacBook and the compute clusters I regularly use.
Shell
4
star
9

bmapathway

MATLAB source code to accompany the PLoS Genetics paper, "Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease".
MATLAB
4
star
10

neuron

Code and data implementing statistical analyses for Neuron manuscript, "Genetic background limits generalizability of genotype-phenotype relationships"
R
3
star
11

R-survival-large-scale

Materials for tutorial, "A survival guide to large-scale data analysis in R."
R
3
star
12

lgsmfear

R code implementing QTL mapping of fear conditioning traits in LG/J x SM/J mouse advanced intercross line.
R
3
star
13

genotype

Various scripts and functions for manipulating genetic data.
R
2
star
14

kyoto

Module for 2014 Kyoto Course on Bioinformatics
R
2
star
15

b6d2muscle

R code implementing QTL mapping of hindlimb muscle weights in C57BL/6J ("B6") x DBA/2J ("D2") mouse advanced intercross line.
R
2
star
16

pcarbo.github.io

Personal website
HTML
1
star
17

mixopt-experiments

Empirical comparisons of algorithms for solving the "mixture distribution" optimization problem.
R
1
star
18

rrqr

Toy R package implementing the rank-revealing QR decomposition using RcppEigen.
C++
1
star
19

vardemo

Small demonstration of importance sampling, Laplace's method and a variational approximation for logistic regression
TeX
1
star
20

colab

Explorations of the Google Colaboratory.
Jupyter Notebook
1
star
21

mr-mash

A simple implementation of the multivariate multiple regression method with adaptive shrinkage priors ("mr-mash"), with examples.
R
1
star
22

genetic-data-analysis-rcc-1

Research Computing Center introduction to analysis and visualization of genetic data, Part 1
MATLAB
1
star
23

genetic-data-analysis-rcc-2

Research Computing Center introduction to analysis and visualization of genetic data, Part 2
R
1
star
24

breedail

R code to select breeders from an advanced intercross line so that they minimize inbreeding in the offspring
R
1
star
25

gwas-demos

Some R code used to illustrate basic concepts in genome-wide association studies.
R
1
star