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Updated 9 months ago

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A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

cgview

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.

Java

helpful_commands

Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.

cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

Perl

helpful_links

Links to resources related to bioinformatics and data analysis.

ncbi_search

This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.