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split_bed_by_index
Split bed intervals by estimated read counts from bam indextoil_container
🐳 Toil + Docker and Singularity.split_bed_by_reads
Split bed intervals by maximum read countstoil_cnacs
toil wrapper for CNACSIPSSMstudy
IPSS-M studyipssm
Molecular International Prognostic Scoring System IPSS-M for Myelodysplastic Syndromesistack
Icon stack bars with group coloringregister_apps
👾 Register versioned toil container pipelines in a bin directory as singularity images.Gao_NC_CH
Code and Data for Gao et al., Nature Communications 2021Shukla_Levine_Gundem
Data for Shukla, Levine, Gundem et al.MDS-TP53-state
TP53 allelic state in MDScookiecutter-toil
🍪 Cookiecutter template for Class Based Toil pipelines.Tazi_NatureC_AML
Github Repository for Tazi et al. : Unified classification and risk-stratification in Acute Myeloid Leukemia. Please check our online tool : https://www.aml-risk-model.com/alie
🚀 register new bash aliases and functions with ease.bolton_NG_CH
Code and Data for Bolton et al., Nature Genetics 2020isabl_cli
🤖 isabl Command Line Client and SDK.MDS_SF3B1_iPSC
Repository of Asimomitis et al. Blood Advances publication: Patient-specific MDS-RS iPSCs define the mis-spliced transcript repertoire and chromatin landscape of SF3B1-mutant HSPCs (https://doi.org/10.1182/bloodadvances.2021006325)Domenico_Asimomitis_ICML_2023
Code accompanying "High-Resolution Interpretable Classification of Artifacts versus Real Variants in Whole Genome Sequencing Data from Archived Tissue" by Domenico & Asimomitis et al. https://icml-compbio.github.io/2023/papers/WCBICML2023_paper116.pdfbinderscience
Reproducible science integrated with mybinderclick_demultiplex
➗ demultiplex a paired-end fastq files upon barcodes.Love Open Source and this site? Check out how you can help us