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CFos_Granule_Cells2D
In 2D images of granule cells, count nuclei and c-Fos-positive cellsQuPath_Emeu
Spheroid_Endothelium
Stardist_Notebooks
Jupyter notebooks to train Stardist modelsRNA_Scope_PV
IHC and RNA ScopeQuPath_VacuolesInBundles
QuPath_TUNEL
Mito_Morph_Astro
VeCell
QuPath_Motoneurones
Nuclei_ORF1P
VGlut2_GluR2_GFP_Fiber
QuPath_ORF1P
Vessel_IB4
Astro_Oxytocin
FrapFit
NeuN_IBA1_Astro_Prots
GFP_PV_PNN
QuPath_DAB_Brain_Tumor
PML_LiveCells
Distribution_NileRed
Dots NileRed in oocytes - distributionPV_PNN_GFP
ColocGenes2D
Astro_FineProcessAnalysis
GFAP_NeuN_IP3R1
NeuN_CFos
Lamin_ORF1P
Nucleus_Forms
Vessel_Scope_IB4
3DSkel
Coloc_3DCells
EDP_bacteriaDetection
Mito_Morph
Genes_2DCells
AstroFineProcessStats
Emma_Bacteria
DAPI_NEUN_ORF1P
PML_Partners_FixedCells
PML_FixedCells
RNA_PECAM_DAPI
Cadherin_Junctions
Foci_in_bacteria
Astrocytes_InOut_Vessels
Vessels_Microglia_Endothelium
DNA_PML_Morph
MNP9_NeuN_PV
Fly_Foci_Nucleus
Astro_Dots_AI_Nucleus
DNA_in_bacteria
Find DNA in bacteriaOvocyte_Nucleus
QuPath_Megakaryocytes_Neutrophils
Vglut_Psd95_Kir
DNA_In_Border_Bacteria
HA_ORF1P_Prot
QuPath_DAB_Heart_Lung
QuPath_Isolectine_Heart
Astro_Dots
qupath-extension-cellpose
Orion_QuPath_Scripts
Some QuPath useful scriptsOrion_Macros
Some ImageJ/Fiji useful macrosVglut2_GFP_Weka_Maela
Vglut2_GFP_Fibers
JellyFish_Foci_Nucleus
RNA_In_Astro_Vessels
Vessels_Microglia
Galanin_Mafa
Th_Nucleus_Cytoplasm
Linked_Cells
Orion-Toolbox
Vglut2_GFP_Weka_Shayan
RNA_Scope_Nerve
Spheroid_Expansion
QuPath_Foci
RNA_Scope
Granule_Cells3D
In 3D images of granule cells, count nucleiSFPQ_Nuclei_Overlap
Isolectin_Dextran
Iba1
DAPI_PML_RNF
MNP9_NeuN_Astro
Proteins_Segmentation
bCat_pPAX
Sox9_PV_CFos
RNA_Scope_DAPI
Gal_Mafa_CFos
Hoechst_ORF1p_pTAU
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