orangeSi/grepfile

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Rank 3,205,125 (Top 65 %)
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Crystal
Created over 4 years ago
Updated over 2 years ago

orangeSi/grepfile

orangeSi

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a alternative for $grep -f A.list B.list which cost too many memory and time

GSSplayground

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

ISfinder_database

download isfinder database

tinypandas

easy-to-use data structures and data analysis tools ( still be in draft, inspired by Python Pandas )

pymsaploter

plot Multiple Sequence Alignment(MSA) of Clustal by python package

bam2msa

convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region

biokits

bioinformatics tools

rr

a simple bookmark tool by crystal-lang in command line of terminal for lazy guy in Linux

doi2scihub

a simple chrome extension for navigate to scihub by doi

bin

some small script in bioinformatics

Jfire.jl

Jfire is a simple julia package for auto generate command line interfaces (CLIs) to call functions or modules, inspired by fire package of python

pykits

simple python script for bioinformatics

heatmapy

simple categorical heatmap or segment value-color free defined by user

pygtrait

genome chromosome traits or marker annotation plot

Jupyter Notebook

pmsaexplore

online explore protein multiple sequence alignment for primary/secondary/3D structure by https://orangesi.github.io/pmsaexplore/

flying_report

simple markdown tool for static html document, like bioinformatics pipeline report