opencb/hpg-bigdata

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17
Rank 1,257,181 (Top 25 %)
Language
Java
License
Apache License 2.0
Created over 9 years ago
Updated over 6 years ago

opencb/hpg-bigdata

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This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

opencga

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact [email protected] for bug report and feature requests.

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

jsorolla

JSorolla is a JavaScript Library for biological and genomic data visualization

genome-maps

An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.

hpg-aligner

HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment

biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

iva

Generic Interactive Variant Analysis browser

hpg-pore

hpg-variant

A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

cell-maps

An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks

bionetdb

BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database

ga4gh

This repository implements the Protobuf and Avro schemas from GA4GH available at http://ga4gh.org/#/schemas

easyngs

EasyNGS provide a rich and interactive web application for NGS data processing

hpg-libs

C libs for HPG project

oskar

Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics

java-common-libs

OpenCB common libs project

variant

Variant is an ambitious project aimed to provide a complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

datastore

Datastore library for querying RDBMS and NoSQL databases

opencb.github.io