olgabot/dotfiles olgabot/dotfiles

  • Stars
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    4
  • Rank 3,304,323 (Top 66 %)
  • Language
    Emacs Lisp
  • License
    MIT License
  • Created about 10 years ago
  • Updated about 2 years ago
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olgabot/dotfiles
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Repository Details

Collection of rc files for easy portability

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awesome-expectations

Examples of great academic lab expectations, manuals, policies for joining and being in the lab
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Single Cell Analysis course at Cold Spring Harbor Laboratory 2017
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backup of old blog at sciencemeetproductivity.tumblr.com
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cheatsheets

Quick lookup documents for commonly used tools
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abi2fastq

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8

sj2psi

Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
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kvector

kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
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11

dissertation

Computational analysis of single-cell alternative splicing: A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Bioinformatics and Systems Biology
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12

codeneuro_sf2015_dataset_packaging

Notes from dataset packaging subgroup at CodeNeuro
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13

poshsplice

PoshSplice is a collection of scripts and functions used to annotate splicing events, exons, and their functional consequences
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14

macosko2015

Expression data for Macosko et al, "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets," Cell (2015)
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15

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WasabiPlot is a flexible coverage and junction read plotter that heavily borrows from MISO's SashimiPlot
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16

gscripts

General Use Scripts and Helper functions
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17

bonvoyage

Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.
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permission-letters

LaTeX template for creating co-author permission letters for UCSD dissertation submissions
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segerstolpe_palasantza2016

Expression and metadata for Segerstolpe + Palasantza et al, "Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes" in Cell Metabolism (2016)
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List of women in open source, open science, open access fields
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22

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Circular graphic representation of time spent during the day
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24

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Analyze psytoolkit data
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25

pydata2014biodata

Slides and ipython notebooks accompanying talk given at PyData NYC 2014
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26

pyhomer

Utility functions to work with output from the HOMER motif finding program
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27

rnaseek

Scripts and modules for parsing and aggregating output files from RNA-sequencing data
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28

nextflow-each-metadata-error

Repo to test nextflow `each` directive with metadata
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