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  • Language
    R
  • License
    Apache License 2.0
  • Created over 3 years ago
  • Updated about 3 years ago

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Repository Details

More Repositories

1

Covid19CharacterizationCharybdis

Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographic, clinical characteristics, treatments and outcomes of interest among individuals tested for SARS-CoV-2 and/or diagnosed with COVID-19 compared to Influenza patients from 2017-2018
R
19
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2

LegendT2dm

R
9
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3

Covid19PredictionStudies

Development and validation OHDSI network studies for the covid19 prediction topic
R
9
star
4

HERACharacterization

Health equity research assessment (HERA) - a large scale characterization of gender and racial disparities
R
9
star
5

MentalHealthEquity

Assessing Health Equity in Mental Healthcare Delivery Using a Federated Network Research Model
R
8
star
6

Covid19HospitalizationCharacterization

Clinical Characterization of COVID-19
R
8
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7

PioneerWatchfulWaiting

This study is part of the joint PIONEER - EHDEN - OHDSI studyathon in March 2021, and aims to advance understanding of clinical management and outcomes of watchful waiting in prostate cancer.
R
7
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8

MethodsLibraryPleEvaluation

R code used to evaluate the OHDSI Methods Library for population-level estimation
R
7
star
9

Covid19EstimationHydroxychloroquine

Retrospective, real-world, observational study to estimate the population-level effects of hydroxychloroquine among patients with rheumatoid arthritis. Designed and executed during the OHDSI community COVID-19 virtual study-a-thon (March 26-29) to inform healthcare decision-making in response to the current global pandemic.
R
7
star
10

HowOften

[under development] Large-scale incidence characterization
HTML
6
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11

DeepLearningComparison

Investigating different deep learning approaches
R
5
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12

StudyRepoTemplate

A template for new study repositories
TeX
5
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13

RanitidineCancerRisk

RanitidineCancerRisk
R
5
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14

Cervello

Covid-19 pandEmic impacts on mental health Related conditions Via multi-database nEtwork: a LongitutinaL Observational study (CERVELLO)
R
4
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15

BipolarMisclassificationValidation

OHDSI network study: external validation of a simple score model that predicts whether patients newly diagnosed with MDD actually have bipolar
R
4
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16

AntiVegfKidneyFailure

R
3
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17

BreastCancerBetweenScreen

WOO 2019 study: Predicting breast cancer within 3 years of a negative mammography
R
3
star
18

PCE

Network study validating the Pooled Cohort Equation Model
R
3
star
19

ConceptPrevalence

A package to calculate the counts of the standard and source concepts in an OMOP CDM and extract the current version of the mappings used.
TSQL
3
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20

Covid19Icarius

Real-world, observational study to estimate the population-level effects of angiotensin converting enzyme (ACE) inhibitors and angiotensin II receptor blockers (ARB) on coronavirus disease (COVID-19) incidence and complications
R
3
star
21

EvaluatingCardinalityMatching

This study aims to evaluate the performance of cardinality matching and large-scale propensity score matching at progressively smaller sample sizes and more stringent parameter settings among new users of ACEI vs. thiazide or thiazide-like diuretic monotherapy applying the framework set forth in the LEGEND-HTN study.
R
3
star
22

PhenotypePhebruaryCapr

Repo to store Capr implementations of all cohort definitions created during Phenotype Phebruary
R
3
star
23

DeadModel

A package for implementing the death imputation model on OMOP CDM data
R
2
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24

PsmVsCm

Indirect covariate balance and residual confounding: an applied comparison of propensity score matching and cardinality matching
R
2
star
25

HIVTreatmentPathways

2
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26

Corazon

R
2
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27

Covid19SubjectsAesiIncidenceRate

Extending on our previous work by Li et al. in understanding the incidence rates of adverse events of special interest (AESI) for COVID-19, this work will look at the rates of these AESIs in patients who had COVDI-19 disease.
R
2
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28

dGEMcovid

R
2
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29

ScyllaCharacterization

The aim of this study is to characterize all emerging drug therapies used in COVID-19 treatment.
R
2
star
30

cmcEndoPcos

Study specifications from the DBMI/OHDSI/JNJ Study-a-thon on Women's Health.
HTML
2
star
31

MyositisNetworkStudy

OHDSI Network Study lead by John Hopkins Myositis Group
R
2
star
32

DistributedLMM

A distributed method for calculating pooled effect estimates applied to COVID-19 hospitalization
R
2
star
33

PORPOISE

PORPOISE research code and materials for training and validating ML models on the network of OMOP CDM databases.
R
2
star
34

EhdenCovidUseCase

The aim of this study is to estimate treatment effects for COVID-19 treatments using data from the EHDEN network and to combine these observational results with data from randomised studies.
R
2
star
35

MusculoskeletalAEsAfterAIs

A Population level estimate (PLE) cohort study with prior A Cohort Diagnostics study to determine the feasibility using non-identifiable data mapped to the OHDSI Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) to evaluate the risk of adverse musculoskeletal events in post-menopausal women taking AI compared to tamoxifen to treat breast cancer.
R
2
star
36

EhdenRaDrugUtilization

Rheumatoid arthritis drug utilization (Barcelona Study-a-thon 2020)
R
2
star
37

NLP-Oncology

[under development] Redoing Karthik's cancer pathways study with and without NLP-derived histology data (mapped to cancer teminologies)
TeX
2
star
38

SemaglutideNaion

OHDSI network study for population-level effect estimation of risk of NAION and other vision disorders from exposure to semaglutide.
R
2
star
39

Eumaeus

Evaluating Use of Methods for Adverse Event Under Surveillance (for vaccines)
HTML
2
star
40

CovidSeverityPrediction

The algorithm to predict mortality and severe clinical outcome in patients with COVID-19
R
1
star
41

Ceeamos

OHDSI study to investigate the risk of schizophrenia in hypertensive patients using ACE inhibitor
R
1
star
42

Glp1ClrdEstimation

R
1
star
43

PhenotypePhebruary

R
1
star
44

EhdenRaPrediction

Prediction of clinical outcomes after methotrexate initiation
R
1
star
45

DMCharacterizationAP

1
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46

TicagrelorVsClopidogrel

OHDSI network study: Net Adverse Clinical Event between Ticagrelor and Clopidogrel in Patients with Acute Coronary Syndrome
R
1
star
47

Covid19CohortEvaluation

A central package for evaluation the cohorts used in the various Covid-19 studies
R
1
star
48

PhenotypeLibraryDiagnostics

Computing cohort diagnostics for all cohort definitions in the OHDSI Phenotype Library
R
1
star
49

FluoroquinoloneAorticAneurysm

[under development]
R
1
star
50

MddAfterBbValidation

R
1
star
51

Covid19VaccinePrediction

A methodology study into the stability of prediction models across target cohort and outcome phenotypes
R
1
star
52

Covid19VaccineAesiDiagnostics

R
1
star
53

Medon

Methods Evaluation of Durability in a Observational Network (MEDON).
TeX
1
star
54

VaccineEffectivenessEvaluation

R
1
star
55

Covid19DrugRepurposing

Evaluation of the safety (and where possible efficacy) of existing drugs considered for treatment of COVID-19.
R
1
star
56

ExistingStrokeRiskExternalValidation

A package for validating some previously published stroke models
R
1
star
57

COVID19CancerBaselineCharacterization

Future OHDSI network study to understand the baseline characteristics of cancer patients with COVID-19
1
star
58

OutcomeMisclassificationSysRev

Systematic review of outcome misclassification correction in pharmacoepidemiology
HTML
1
star
59

CauseSpecificMortality

Development of cause of death predictive model using Patient-level prediction
R
1
star
60

LegendT2dmEvidenceExplorer

LEGEND-T2DM Evidence Explorer
R
1
star
61

Covid19SusceptibilityAlphaBlockers

R
1
star
62

PandemicPrediction

Validating the COVID prediction models across time and databases
R
1
star
63

PceCohortDiagnostics

R
1
star
64

OT2DSI

Observational study of type 2 diabetes and its complications: a chronological overview using the OHDSI network
R
1
star
65

MultipleSclerosisBiologicsPml

[under development]
HTML
1
star
66

FeatureSelectionComparison

PatientLevelPrediction methods research investigating different feature selection approaches for simplifying models
TeX
1
star
67

EmptyStudyRepository

An empty repository, to be used as the template for new studies
1
star
68

EhdenRaDmardsEstimation

Retrospective, real-world, observational study to estimate the population-level effects of conventional synthetic disease-modifying antirheumatic drugs among patients with rheumatoid arthritis. Designed and executed at the EHDEN Study-a-thon in Barcelona, January 2020.
R
1
star
69

ScyllaEstimation

This OHDSI network study assesses the comparative effectiveness and safety among treatments administered during hospitalization and prior to intensive services. It also assesses the comparative effectiveness and safety among treatments administered after COVID-19 positive testing or diagnosis in the outpatient setting without prior hospitalization.
R
1
star
70

ReproducibilityRayJAMA2021

Reproducibility study of Ray et al JAMA 2021 comparative effectiveness of rivaroxaban vs apixaban in atrial fibrillation
R
1
star
71

CancerTxPathway

A package to extract chemotherapy records for cancer patients. The chemotherapy records are instantiated as Episode / Episode Event table with corresponding regimen as episode source concept id. The package also portrait the treatment patterns for patients with cancer and onset timing of the adverse event, i.e., neutropenia.
R
1
star
72

IbdCharacterization

Characterization study of inflammatory bowel disease
R
1
star
73

Covid19EstimationHydroxychloroquine2

Retrospective, real-world, observational study to estimate the population-level effects of hydroxychloroquine among patients with rheumatoid arthritis on select psychiatric and influenza outcomes. Designed during the OHDSI community COVID-19 virtual study-a-thon (March 26-29) to inform healthcare decision-making in response to the current global pandemic.
R
1
star