nmdp-bioinformatics/dash nmdp-bioinformatics/dash

  • Stars
    star
    12
  • Rank 1,597,372 (Top 32 %)
  • Language
    HTML
  • License
    GNU Lesser Genera...
  • Created about 10 years ago
  • Updated 6 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
nmdp-bioinformatics/dash
github

nmdp-bioinformatics

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Data Standards Hackathon for NGS based typing.

More Repositories

1

ngs

Next generation sequencing (NGS/HTS) tools.
Java
17
star
2

py-ard

HLA ARD Reduction in Python
Python
16
star
3

flow

Consensus assembly and variant calling workflow.
12
star
4

ImmunogeneticDataTools

Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium
Java
11
star
5

igloader

HL7® FHIR® implementation guide uploader (from IGPack tarfile).
Python
9
star
6

gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE
Makefile
8
star
7

grimm

GRIMM: Graph IMputation and Matching for HLA Genotypes
Python
8
star
8

pipeline

Consensus assembly and allele interpretation pipeline.
HTML
7
star
9

phycus

Service used for curation of Haplotype Frequency
Java
7
star
10

act-service

Allele Calling Tool (ACT)
Python
5
star
11

seq-ann

Python package for doing fast and accurate sequence annotation
Python
5
star
12

multiple-allele-code

Services and libraries for handling multiple allele codes and IMGT/HLA nomenclature
Java
5
star
13

flow-OptiType

Use nextflow to run BAM files through OptiType
4
star
14

BRIDGModel2Graph

BRIDG Model by version used to populate a Graph Database.
4
star
15

CIWD

CIWD data in computable form
4
star
16

service-epitope

T-cell epitope group matching service for HLA-DPB1 locus
Java
3
star
17

imgt_biosqldb

The IMGT/HLA sequence data persisted in a BioSQL database
Python
3
star
18

hml

Histoimmunogenetics Markup Language (HML).
3
star
19

imgt2aa

extract aligned amino acid sequences from IMGT/HLA
Perl
3
star
20

gfe-service

GFE Webservice: Provides REST endpoints to GFE related functions
Python
3
star
21

hml-fhir-app

HML to FHIR Conversion Application
Java
3
star
22

miring-validator

Semantic Validator for MIRING-compliant HML
Java
2
star
23

flow-validation

Validation workflow.
2
star
24

py-graph-imputation

Graph Imputation
Python
2
star
25

MiHAIP

Java
2
star
26

genotype-list

Genotype List service, client library, and command line tools.
Java
2
star
27

hla-reporting-ig

FHIR Implementation Guide for HLA reporting
HTML
2
star
28

service-feature

Enumerated sequence feature service.
Java
2
star
29

gfe-docker-compose-app

GFE service and GFE Database Docker Compose
2
star
30

GFE

Gene Feature Enumeration for polymorphic genes
2
star
31

tarr2fhir

Convert tarr2fhir Sync4Genes - Versiti and GenDx
Java
1
star
32

hml-validation-portal

Portal for HML validation
HTML
1
star
33

service-hml-fhir-converter

Mid level API to handle web-hmlFhirAngularClient
Java
1
star
34

act-client

Python client for working with the ACT service
Python
1
star
35

docker-validation

Docker container for the validation workflow.
1
star
36

service-hml

HML service.
Java
1
star
37

py-grimm

Python
1
star
38

py-gfe

Python package for creating GFE notation from annotated sequences
Python
1
star
39

cytoscape-donor-cluster

An implementation of the cytoscape.js network diagram applied to a donor search that was fitted with a SVM model
JavaScript
1
star
40

flow-GFE

Run fasta files through GFE with nextflow
Shell
1
star
41

nmdp-bioinformatics.github.io

Organization Website for NMDP Bioinformatics
HTML
1
star
42

ihiw-pedigree-sim

Simulation of ambiguous HLA typing data inherited within family pedigrees for 18th IHIW Project
Perl
1
star
43

flow-blast-hml

nextflow pipeline for extracting, blasting and validating all consensus sequences found in an HML file.
1
star
44

web-hml-fhir-converter

Client Application To Create HL7-Fhir messages with a base of HML
JavaScript
1
star