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argparse-bash
Use python's argparse module in shell scriptsorg-export
batch export of org-mode files from the command linebioscons
Extends the scons build tool for reproducible workflows in bioinformatics..emacs.d
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Reformat and condense multiple sequence alignments to highlight variabilitySeq
(abandoned) python utilities for manipulation of biological sequencesswarmwrapper
Wraps swarm to perform pooled dereplicationmkvenv
A wrapper for virtualenv, pip, and wheelrvenv
Install and manage R packages in a python virtualenv.emacs-config
My emacs configuration, take 2barcodecop
Enforce barcode match stringency and read quality in demultiplexed MiSeq readsfastalite
Simplest possible fasta/fastq parseropiates
Automated QA for a clinical LC/MS urine opaites assayborborygmi
A blog built using emacs org-mode and Pelicanya16sdb
A curated subset of 16S rRNA sequences from NCBIpymenu
Provides a simple, interactive text-based user interfaceunittools
Lightweight utility for running python unit testsuwgroups
Python library and CLI for UW Groups APImypy
Configuration for my python environmentdada2-nf
A Nextflow pipeline for processing 16S rRNA sequences using dada2ungapatchka
A python project template with bells and whistlesdeduplicate
Remove duplicates from collections of biological sequenceslab-software-whitepaper
A whitepaper describing software development best practices for the clinical laboratoryLove Open Source and this site? Check out how you can help us